RetrogeneDB ID: retro_mluc_1494

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429849:1985028..1986050(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000007757
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: ZC3H15
• Ensembl ID: ENSMLUG00000007741
• Aliases: None
• Description: None

Sequence

>retro_mluc_1494
AAAACTTTTGGTCTAAAGAACAAGAAAGGAGCAAAGCAGCAGAAGTTTATCAAGGCTGTCACTCATCAAGTTAAGTTTGG
TCAGCGGAATCCACGCCAGGTAGCACAGAGTGAAGCTGAAAACAAATTAAAGAAAGATGACAAGAAGAAAGAATTGCAAG
AGCTAAATGAGCTATTCAAGCCTGTAGTTGCTGCTCAAAAAATAAGTAAAGGTGCCGACCCCAAGTCTGTGGTGTGCGCC
TTCTTCAAGCAAGGGCAGTGCAGGAAGGGGGACAAGTGCAAGTTCTCCCATGACCTCAGTCTGGAGAGGAAGGGCGAGAA
GCCAAGTGTTTACATTGATGCAAGAGATGAAGAACTTGAAAAAGATACTATGGAAAACTGGGATGAGAAGAAACGGAAAG
AAGTGGTGAACAAGAAGCACGGTGAGGCGGAAAAGAAAAAGCCAAAAACGCAAATAGTGTGCAAGCATTTCCTTGAAGCT
ATTGAAAACAACAAATACGGCTGGTTTGGGGTATGCCCGGGAGGGGGCGATATTTGTATGTATTCTCATGCACTTCTTTC
TGGATTTGTATTGAAAAAAGTTAAAAAGAAAGAAGATGAAATTTCATCAGAAGATCTCATTGAAAGAGAGCGCTCTGCCC
TTGGTCCAAAGGTTACCAAAATCACTCTAGAATCTTTCCTCGCCTGGAAGAAAAGGAAAAGACAAGAAAAGATCGATAAA
CTGGAGCAAGATACGGAGAGAAGGAAAGCAGACTTCAAGGCGGGGAAAGCATTGGTGATCAGTGGTCGTGAGGTGTTTGA
ATTCCGTCCTGAATTGGTGGACAATGACGATGAGGAAGCAGACCATACCCGCTATACCCCGGAGCAGGCGATGATGAGGC
TGATGACCCAGTGAGCATAAATGACATAGATTTAAACCTGTACATCCCAAGAGATGTGGACGAGACAGGCATCACTGTGG
CCAGTCTTGAACGATTCAGCACATACACTTCAGAAAAAGGTGAAAACAAATCGAGCGAAGCT

Alignment

ORF - retro_mluc_1494 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 89.28 %
• Parental protein coverage: 85.79 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  KTFGLKNKKGAKQQKFIKAVTHQVKFGQQNPRQVAQSEAEKKLKKDDKKKELQELNELFKPVVAAQKISK
          KTFGLKNKKGAKQQKFIKAVTHQVKFGQ.NPRQVAQSEAE.KLKKDDKKKELQELNELFKPVVAAQKISK
Retrocopy KTFGLKNKKGAKQQKFIKAVTHQVKFGQRNPRQVAQSEAENKLKKDDKKKELQELNELFKPVVAAQKISK

Parental  GADPKSVVCAFFKQGQCTKGDKCKFSHDLTLERKGEKRSVYIDARDEELEKDTMDNWDEKKLEEVVNKKH
          GADPKSVVCAFFKQGQC.KGDKCKFSHDL.LERKGEK.SVYIDARDEELEKDTM.NWDEKK..EVVNKKH
Retrocopy GADPKSVVCAFFKQGQCRKGDKCKFSHDLSLERKGEKPSVYIDARDEELEKDTMENWDEKKRKEVVNKKH

Parental  GEAEKKKPKTQIVCKHFLDAIENNKYGWFWVCPGGGDICMYRHALPPGFVLKKDKKKEEKEDEISLEDLI
          GEAEKKKPKTQIVCKHFL.AIENNKYGWF.VCPGGGDICMY.HAL..GFVLKK.KKKE...DEIS.EDLI
Retrocopy GEAEKKKPKTQIVCKHFLEAIENNKYGWFGVCPGGGDICMYSHALLSGFVLKKVKKKE---DEISSEDLI

Parental  ERERAALGPNVTKITLESFLAWKKRKRQEKIDKLEQDMERRKADFKAGKALVISGREVFEFRPELVDDDD
          ERER.ALGP.VTKITLESFLAWKKRKRQEKIDKLEQD.ERRKADFKAGKALVISGREVFEFRPELVD.DD
Retrocopy ERERSALGPKVTKITLESFLAWKKRKRQEKIDKLEQDTERRKADFKAGKALVISGREVFEFRPELVDNDD

Parental  EEADDTRYT-QGAGGDEVDDSVSINDIDVSLYIPRDVDETGITVASRERFSAYAAERDENKLSEA
          EEAD.TRYT..GAG.DE.DD.VSINDID..LYIPRDVDETGITVAS.ERFS.Y..E..ENK.SEA
Retrocopy EEADHTRYT<PGAGDDEADDPVSINDIDLNLYIPRDVDETGITVASLERFSTYTSEKGENKSSEA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1494 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 17 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000012965	2 retrocopies	retro_cpor_1294, retro_cpor_919,
Loxodonta africana	ENSLAFG00000001563	1 retrocopy	retro_lafr_941,
Myotis lucifugus	ENSMLUG00000007741	2 retrocopies	retro_mluc_1494 , retro_mluc_2467,
Monodelphis domestica	ENSMODG00000027565	5 retrocopies	retro_mdom_1230, retro_mdom_1321, retro_mdom_1744, retro_mdom_1942, retro_mdom_871,
Oryctolagus cuniculus	ENSOCUG00000011903	1 retrocopy	retro_ocun_886,
Ochotona princeps	ENSOPRG00000015790	2 retrocopies	retro_opri_169, retro_opri_609,
Rattus norvegicus	ENSRNOG00000005256	4 retrocopies	retro_rnor_2628, retro_rnor_284, retro_rnor_662, retro_rnor_925,