Parental gene:

ZC3H15, ENSCPOG00000012965

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_3:5246816..5265182(-)


>ENSCPOG00000012965
ATGCCCCCCAAGAAACAGGCTCAGGCCGGGGGCAGCAAAAAGGCGGAGCAGAAAAAGAAGGAGAAGATTATTGAGGACAA
AACTTTTGGTCTAAAGAACAAGAAAGGAGCAAAGCAACAGAAGTTTATCAAGGCTGTCACTCATCAAGTTAAATTTGGTC
AACAAAATCCACGTCAGGTAGCACAAAGTGAAGCTGAAAAGAAATTGAAGAAAGATGACAAGAAGAAAGAATTGCAGGAG
CTAAATGAGCTCTTCAAACCTGTTGTCGCGGCTCAAAAAATAAGTAAAGGTGCAGACCCCAAGTCCGTGGTGTGTGCCTT
CTTCAAGCAGGGCCAGTGCACGAAGGGCGACAAGTGCAAGTTTTCCCACGACCTGACTTTGGAGAGAAAATGTGAAAAAC
GAAGTGTTTACATTGATGCAAGAGATGAAGAACTTGAAAAAGATACAATGGATAATTGGGATGAGAAAAAGCTCGAAGAA
GTAGTGAACAAGAAGCACGGTGAGGCGGAAAAGAAAAAACCAAAAACTCAAATAGTCTGCAAGCATTTCCTTGAAGCTAT
TGAAAATAACAAGTATGGCTGGTTTTGGGTATGCCCTGGAGGGGGTGATAATTGTATGTATCGGCATGCACTTCCTCCTG
GATTTGTGTTGAAAAAAGATAAAAAGAAAGAAGAGAAAGAAGATGAAATTTCGTTAGAAGATCTCATTGAAAGAGAGCGT
TCTGCTCTGGGCCCGAATGTTACCAAAATCACTCTAGAGTCTTTTCTTGCGTGGAAGAAAAGGAAAAGACAAGAAAAGAT
TGACAAACTTGAGCAAGACATGGAAAGAAGGAAAGCTGACTTCAAAGCGGGAAAGGCGCTGGTGATCAGTGGCCGAGAGG
TGTTTGAATTCCGCCCTGAACTGGTCAATGACGACGATGAGGAAGCTGACGACACGCGCTACACTCAGGGAGCAGGTGGC
GACGAGGTTGATGATTCCATGAGCGTAAATGACATAGACCTAAGCCTGTACATCCCAAGAGATGTAGATGAGACAGGCAT
TACTGTAGCCAGTCTTGAAAGATTCAGCATATACGCTCCAGATAAGGACGAAAATAAACTCAGCGAAGCTTCTGGAGGTC
GGGCTGAAAATGGCGAACGCAGTGACTTGGAGGAGGGCAGTGAAGCGGGTGGACCAGAAAACGGAGCCCTCGGAGCTGTT
CCTGTGGACGAGAACCTTTTCACTGGGGAGGATCTGGATGAACTGGAAGAAGAACTAAACACACTCGATCTAGAAGAA

Library Parental gene expression (RPM)
SRP017611_brain 52 .40 RPM
SRP017611_kidney 48 .68 RPM
SRP017611_liver 32 .12 RPM
SRP040447_lung 31 .95 RPM
SRP040447_skeletal_muscle 22 .17 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000021762 ortholog_one2one 1 retrogene
retro_btau_1223,
Choloepus hoffmanni ENSCHOG00000011958 ortholog_one2one 1 retrogene
retro_chof_2120,
Callithrix jacchus ENSCJAG00000005931 ortholog_one2one 2 retrogenes
retro_cjac_2883, retro_cjac_3986,
Dipodomys ordii ENSDORG00000011664 ortholog_one2one 1 retrogene
retro_dord_666,
Loxodonta africana ENSLAFG00000001563 possible_ortholog 1 retrogene
retro_lafr_941,
Myotis lucifugus ENSMLUG00000007741 possible_ortholog 2 retrogenes
retro_mluc_1494, retro_mluc_2467,
Monodelphis domestica ENSMODG00000027565 ortholog_many2many 5 retrogenes
retro_mdom_1230, retro_mdom_1321, retro_mdom_1744, retro_mdom_1942, retro_mdom_871,
Oryctolagus cuniculus ENSOCUG00000011903 ortholog_one2one 1 retrogene
retro_ocun_886,
Otolemur garnettii ENSOGAG00000002182 ortholog_one2one 2 retrogenes
retro_ogar_1093, retro_ogar_611,
Ochotona princeps ENSOPRG00000015790 ortholog_one2many 2 retrogenes
retro_opri_169, retro_opri_609,
Pan troglodytes ENSPTRG00000012717 ortholog_one2one 1 retrogene
retro_ptro_348,
Rattus norvegicus ENSRNOG00000005256 ortholog_one2many 4 retrogenes
retro_rnor_2628, retro_rnor_284, retro_rnor_662, retro_rnor_925,
Sorex araneus ENSSARG00000012071 ortholog_one2one 1 retrogene
retro_sara_363,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_919 73.92 95.77
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2. retro_cpor_1294 94.04 50.70
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Download FASTA sequences of all ENSCPOG00000012965 retrocopies