RetrogeneDB ID: retro_mluc_1592

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429868:4027450..4027844(-)
• Located in intron of: ENSMLUG00000023413

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: RPL10
• Ensembl ID: ENSMLUG00000014337
• Aliases: None
• Description: None

Sequence

>retro_mluc_1592
GGCAAAGATGGCTTTCACCTCCGAGGGCGGCTCCACCCCTCCCACGTCATCCACATCAACAAGATGTCCTGTGCTGGAGC
TGACAGGCTCCAGACAGGCATGCAGGGTGCCTCTGGAAAGCCCCAGGGCACCGTGGCCAGGGTCCATGTTGGCCATGTCA
TGTCCATCCGCACCAAGCTGCAGACCAAGGATCATGTCATTGGGCCCTACGCAGAGCCAAGTTCAAGCACCCTGGCCACC
AGAAGATCCACATCTCCAAGAAGGGGGATTGGACTAAATGTAATTCGGATGAGTTTGAAGACAGGGTGGCTGAAAAGCGG
CTCATCCCAGATGGCTGTGGGGTCAAATACATCCATCGTCGTGGTCCCCTACAAAATGGTGGGCCCTGCACTCA

Alignment

ORF - retro_mluc_1592 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 80.15 %
• Parental protein coverage: 62.62 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  GKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIE
          GKDGFH.R.RLHP.HVI.INKM.SCAGADRLQTGM.GA.GKPQGTVARVH.G.V.MSIRTKLQ.K.HVI.
Retrocopy GKDGFHLRGRLHPSHVIHINKM-SCAGADRLQTGMQGASGKPQGTVARVHVGHV-MSIRTKLQTKDHVIG

Parental  -ALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYIPNRGPLD-KWRALHS
          .ALRRAKFK.PG.QKIHISKK...TK.N.DEFED.VAEKRLIPDGCGVKYI..RGPL..KW.ALHS
Retrocopy <ALRRAKFKHPGHQKIHISKKGDWTKCNSDEFEDRVAEKRLIPDGCGVKYIHRRGPLQ<KWWALHS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1592 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 19 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000007454	2 retrocopies	retro_btau_140, retro_btau_99,
Homo sapiens	ENSG00000147403	3 retrocopies	retro_hsap_2030, retro_hsap_3265, retro_hsap_3437,
Macropus eugenii	ENSMEUG00000013163	3 retrocopies	retro_meug_1839, retro_meug_5, retro_meug_547,
Myotis lucifugus	ENSMLUG00000014337	3 retrocopies	retro_mluc_1592 , retro_mluc_191, retro_mluc_275,
Monodelphis domestica	ENSMODG00000008731	2 retrocopies	retro_mdom_177, retro_mdom_829,
Mus musculus	ENSMUSG00000008682	1 retrocopy	retro_mmus_71,
Pongo abelii	ENSPPYG00000020874	5 retrocopies	retro_pabe_173, retro_pabe_1854, retro_pabe_2036, retro_pabe_2843, retro_pabe_2955,