RetrogeneDB ID: retro_mluc_1600

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429871:3018994..3019305(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: VBP1
• Ensembl ID: ENSMLUG00000015396
• Aliases: None
• Description: None

Sequence

>retro_mluc_1600
AAAGAAGTGTCCATCAATTCATTGGAGACCAGATTCCTCCTGGCAGGTAACTTGTATGGCAAAGCTTCAGTTCCTCCTAC
CGTTAAAGTGTGTCTGTGGATGGGGGCTAATGTTATGCTTGTATATGATATTGATGAAGCTCAGCATTATTGGAAAAGAA
TTTATTGACGGCCACAAAGAATCTTATTCTCTTGAGGAAGACCTTGACTTTTCTTCCAGATGAATTTACTACCACTGAAG
TCAATATAGCCAAGGTTTATAATTGGAACATAAAAAGAAGAAACTAAGATGATTCTACCAAGAACAAAGCA

Alignment

ORF - retro_mluc_1600 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 74.29 %
• Parental protein coverage: 52.26 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  KKESTNSMETRFLLADNLYCKASVPPTDKVCLWLGANVMLEYDIDEAQ-ALLEKNLTTATKNLDSLEEDL
          K..S.NS.ETRFLLA.NLY.KASVPPT.KVCLW.GANVML.YDIDEAQ.ALLEKNL.TATKNL..L...L
Retrocopy KEVSINSLETRFLLAGNLYGKASVPPTVKVCLWMGANVMLVYDIDEAQ<ALLEKNLLTATKNLILLRKTL

Parental  DFLRDQFTTTEIYMARVYNWDVKRRNKDDSAKNKA
          .FL.D.FTTTE...A.VYNW..KRRN.DDS.KNKA
Retrocopy TFLPDEFTTTEVNIAKVYNWNIKRRN*DDSTKNKA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1600 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 8 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000013652	1 retrocopy	retro_cpor_466,
Echinops telfairi	ENSETEG00000017655	2 retrocopies	retro_etel_2085, retro_etel_552,
Latimeria chalumnae	ENSLACG00000016144	1 retrocopy	retro_lcha_18,
Loxodonta africana	ENSLAFG00000016507	2 retrocopies	retro_lafr_1200, retro_lafr_163,
Myotis lucifugus	ENSMLUG00000015396	3 retrocopies	retro_mluc_1600 , retro_mluc_2019, retro_mluc_986,
Macaca mulatta	ENSMMUG00000015095	1 retrocopy	retro_mmul_124,
Oryctolagus cuniculus	ENSOCUG00000017448	2 retrocopies	retro_ocun_233, retro_ocun_747,
Sarcophilus harrisii	ENSSHAG00000002823	1 retrocopy	retro_shar_7,