Parental gene:

ENSCPOG00000013652

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_148:606812..635860(-)


>ENSCPOG00000013652
ATGGCGGCGGCCAAGGACGGTTGTGGTTTGGCAGAAGCGGCTACGGGGAATGGGCGGCGGCTTCACTTGGGTATTCCTGA
GGCCGTGTTTGTGGAAGATGTAGACTCCTTCATGAAACAGCCTGGGAATGAGACTGCAGATACAGTACTAAAGAAGCTGG
ATGAGCAGTACCAGAAGTATAAGTTTATGGAACTCAATCTTGCTCAAAAGAAACGGAGATTGAAAAGTCAGATTCCTGAA
ATCAAGCAGACTTTGGAAATTCTAAAATACATGCAGAAGAAAAAAGAGTCTACCACTTCACTGGAAACCAGATTCTTACT
GGCAGATAACCTGTACTGCAAAGCTTCAGTTCCTCCTACTGATAAAGTGTGTTTGTGGTTGGGGGCTAATGTAATGCTTG
AGTATGATATTGATGAAGCTCAGGCTTTGTTGGAAAAGAATTTATCAACTGCCACGAAGAACCTTGATTCTCTTGAGGAA
GACCTTGACTTTCTTCGAGATCAATTTACTACAACAGAAGTCAATATGGCCAGAGTTTATAATTGGGATGTCAAAAGAAG
AAATAAAGATGATTCTACCAAGAACAAAGCA

Library Parental gene expression (RPM)
SRP017611_liver 17 .58 RPM
SRP017611_kidney 27 .85 RPM
SRP017611_brain 16 .39 RPM
SRP040447_lung 14 .70 RPM
SRP040447_skeletal_muscle 10 .67 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009058 ortholog_one2many 2 retrogenes
retro_amel_1232, retro_amel_1346,
Canis familiaris ENSCAFG00000019639 ortholog_one2many 2 retrogenes
retro_cfam_1030, retro_cfam_573,
Dasypus novemcinctus ENSDNOG00000019432 ortholog_one2many 1 retrogene
retro_dnov_694,
Dipodomys ordii ENSDORG00000004628 ortholog_one2many 2 retrogenes
retro_dord_213, retro_dord_587,
Echinops telfairi ENSETEG00000017655 possible_ortholog 2 retrogenes
retro_etel_2085, retro_etel_552,
Latimeria chalumnae ENSLACG00000016144 ortholog_many2many 1 retrogene
retro_lcha_18,
Loxodonta africana ENSLAFG00000016507 possible_ortholog 2 retrogenes
retro_lafr_1200, retro_lafr_163,
Myotis lucifugus ENSMLUG00000015396 possible_ortholog 3 retrogenes
retro_mluc_1600, retro_mluc_2019, retro_mluc_986,
Macaca mulatta ENSMMUG00000015095 ortholog_many2many 1 retrogene
retro_mmul_124,
Mus musculus ENSMUSG00000031197 ortholog_one2many 1 retrogene
retro_mmus_2220,
Nomascus leucogenys ENSNLEG00000014475 ortholog_one2many 1 retrogene
retro_nleu_537,
Oryctolagus cuniculus ENSOCUG00000017448 ortholog_many2many 2 retrogenes
retro_ocun_233, retro_ocun_747,
Otolemur garnettii ENSOGAG00000016566 ortholog_one2many 1 retrogene
retro_ogar_3121,
Sarcophilus harrisii ENSSHAG00000002823 ortholog_many2many 1 retrogene
retro_shar_7,
Sus scrofa ENSSSCG00000012811 ortholog_one2many 1 retrogene
retro_sscr_131,
Ictidomys tridecemlineatus ENSSTOG00000006684 ortholog_one2many 1 retrogene
retro_itri_1492,
Tupaia belangeri ENSTBEG00000007833 ortholog_one2many 5 retrogenes
retro_tbel_3084, retro_tbel_3369, retro_tbel_3652, retro_tbel_553, retro_tbel_632,
Tarsius syrichta ENSTSYG00000002205 ortholog_one2many 1 retrogene
retro_tsyr_2032,
Tursiops truncatus ENSTTRG00000016258 ortholog_one2many 1 retrogene
retro_ttru_988,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_466 78.17 97.97
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Download FASTA sequences of all ENSCPOG00000013652 retrocopies