RetrogeneDB ID: retro_mluc_1606

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429871:2926538..2926938(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: RAB11A
• Ensembl ID: ENSMLUG00000008820
• Aliases: None
• Description: None

Sequence

>retro_mluc_1606
GCTGTAGGTGCCTTGTTGGTTGATGACATCGCTAAACATCTCACATGTGAAAATGCAGAGCGACGGCTGAAAGAACTGAG
AGGTCATGCTGATAGTAACATTGTCATCATGCTTGTGGGCCATAAGAGTGATTTGTGTCATCTCAGGGCAGTTCCTACAG
ATGAAGCAAGAGCTTTTGCAGAAAAAAAATGGCTTGTCATTCTTTGAGACATCAGCTCTAGACTCTACCAATGTAGAAGC
TGCTTTTCAGACAATTCTGACAGAGATACACCGCATTGTTTCTCAGAAGCAAATGTCAGACAGACGTGAAAATGACATGT
CTCCAAGCAACAGTGTGGTTCCTATTCATGTTCCACCAACCACTGAAAATAAGCCAAAGGTGCAGTGCTATCAGAACATA

Alignment

ORF - retro_mluc_1606 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 88.81 %
• Parental protein coverage: 50.96 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  AVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKN-GLSFIE
          AVGALLV.DIAKHLT.EN.ER.LKELR.HADSNIVIMLVG.KSDL.HLRAVPTDEARAFA....GLSF.E
Retrocopy AVGALLVDDIAKHLTCENAERRLKELRGHADSNIVIMLVGHKSDLCHLRAVPTDEARAFAXXX>GLSFFE

Parental  TSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSNNVVPIHVPPTTENKPKVQCCQNI
          TSALDSTNVEAAFQTILTEI.RIVSQKQMSDRRENDMSPSN.VVPIHVPPTTENKPKVQC.QNI
Retrocopy TSALDSTNVEAAFQTILTEIHRIVSQKQMSDRRENDMSPSNSVVPIHVPPTTENKPKVQCYQNI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1606 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 13 parental genes, and 21 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000018959	1 retrocopy	retro_btau_1850,
Callithrix jacchus	ENSCJAG00000007333	1 retrocopy	retro_cjac_1050,
Echinops telfairi	ENSETEG00000004920	5 retrocopies	retro_etel_1150, retro_etel_2132, retro_etel_2214, retro_etel_694, retro_etel_837,
Homo sapiens	ENSG00000103769	1 retrocopy	retro_hsap_715,
Gorilla gorilla	ENSGGOG00000014252	2 retrocopies	retro_ggor_538, retro_ggor_605,
Myotis lucifugus	ENSMLUG00000001902	3 retrocopies	retro_mluc_1243, retro_mluc_1251, retro_mluc_2103,
Myotis lucifugus	ENSMLUG00000008820	2 retrocopies	retro_mluc_1606 , retro_mluc_2435,
Myotis lucifugus	ENSMLUG00000009818	1 retrocopy	retro_mluc_1875,
Macaca mulatta	ENSMMUG00000008006	1 retrocopy	retro_mmul_2463,
Nomascus leucogenys	ENSNLEG00000012853	1 retrocopy	retro_nleu_467,
Petromyzon marinus	ENSPMAG00000009335	1 retrocopy	retro_pmar_25,
Pongo abelii	ENSPPYG00000006573	1 retrocopy	retro_pabe_618,
Pan troglodytes	ENSPTRG00000007188	1 retrocopy	retro_ptro_510,