RetrogeneDB ID: | retro_mluc_1684 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429885:1281701..1282664(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RNF149 | ||
Ensembl ID: | ENSMLUG00000007110 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 74.11 % |
Parental protein coverage: | 95.63 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 7 |
Parental | FGDSSPK-EGALGLVGVPGARDGDPEGCAPDTRFVVPAPGGGGGGGAAPWVALVAHGGCTLKDK-VLVAA |
F.DSSPK.EGALGLVG.P.ARD..P.GC.P.T.FVVPAP...GG.GA..WVALVA.GGCT.KDK....A. | |
Retrocopy | FSDSSPK<EGALGLVGFPRARD-NPTGCTPNTHFVVPAP---GGRGAVLWVALVARGGCTFKDKVLVTAW |
Parental | RRNAS-AVVIYNEERHGNLTAPLSHAGTGNI-VVIMVSYSKGKEILDLVQKEIQVKMTIGVGTRHVQEFI |
R.....A.V.Y.EERH.NLTAP.SH.GTGNI.V...VSYSKGKE.LDL.QKEIQVKMT.GVGTRH.QEFI | |
Retrocopy | RHASA>AMVTYKEERHRNLTAPMSHVGTGNI>VIM-VSYSKGKEVLDLIQKEIQVKMTVGVGTRHGQEFI |
Parental | NGQSVVFVAIAFIT-MMIISLAWLIFYYIQRFLYTGSQFGSQSHRKET-KKVIGQLPLHTIKHGEKGIDV |
.GQS.VFV..AFIT..MIISL..LIFYYIQRFLYTGSQFGSQSHRK.T.KKVIGQL.LHTIKH.EKG... | |
Retrocopy | SGQSGVFVTFAFIT<TMIISLVRLIFYYIQRFLYTGSQFGSQSHRKAT<KKVIGQLSLHTIKHREKGTAM |
Parental | DAENCAVCIENFKVKDVIRILPCKHIFHRTCIDPWLLDHHTCPMCK-LDVIKAL-GYWGELEDAQEEPAA |
D.ENC.VCIE.FKVK.VIR.LPCKHIFHR.C.DPWL.DHHTCPM...LDVIKAL.GYWGELEDAQE.P.A | |
Retrocopy | DTENCSVCIEDFKVKHVIRNLPCKHIFHRMCTDPWLSDHHTCPMGS<LDVIKAL<GYWGELEDAQEVPVA |
Parental | EAAPGGAVAAAASVSVTVRHEDRSVGSPSPSPSTRDPGPQCSRHLKEDAGESTALL |
EAAPGGAV..A.S.SVTV...D.SVGS.SP.PST.DP.PQCS..LKED.GE.TALL | |
Retrocopy | EAAPGGAV--ASSFSVTVHNKDSSVGSLSPLPSTSDPVPQCSGYLKEDSGENTALL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000012057 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000011956 | 3 retrocopies | |
Macropus eugenii | ENSMEUG00000014821 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000007110 | 1 retrocopy |
retro_mluc_1684 ,
|
Rattus norvegicus | ENSRNOG00000013946 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000016450 | 1 retrocopy |