RetrogeneDB ID: retro_mluc_1825

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429922:1553419..1554145(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ARMC10
• Ensembl ID: ENSMLUG00000006088
• Aliases: None
• Description: None

Sequence

>retro_mluc_1825
CTAGATGCTGAGCCACTTGAGGAACTGCTTCATCTGCTTGAGTCAACCGAACATCCTATAATTATTGAAAAAGCTTTGGT
CACTCTGAGTAGCAATGTGGGCTCTTCAGCTAAGCACATCATTCTTCGTGAATTGGATGGTATTCCCATTATTGGAAGCA
AAATCGGCGATCCCAACCACAGCAATAAAGAGAAGGCTTTAAAGGCACGGAGTCACTTGAGTGTGGATGTTGAAAATAAA
TGAAGATAAAGGTACACGTCAGTCAAGTCTGTGAGGATGTCTTCTCCGGTCCCCTGAACTCCCCGTGCAGCTGGCGGGCT
GAGATGGTTAACTAATATGACAGTTACCAACAACCACCAGCACACGCTGAACAGTTACATTACAGGCTAGTTCCAAGTGT
TGCTTACAGGAAACAGAGGCACCAAGGTTCAGGTTTTGAAACTGCTGTTAAATGTGTCTGAAAATGCGGCCAGGACAGAG
GACTGCTTGGTATCCAGGTGGGTTCCTCATCCCTTTCCCTCTAGGATGGCCATGTAGCAAAGGGGATTCTTCTTCGAGGT
CTGACACTCTTTCAGGACGTAAGTAACTGTCTCAAAAAGGAAGGCCATTTAGCTATTCAGCCTACTGTCACTAAAGTTCA
CTGTTTTTCCTGTTATATGGAGAAGAACGGGCCCAGGAAATGGGAGTGTTGGTTATCACCACGATGCGGACGTGAAGGCA
AAGGTA

Alignment

ORF - retro_mluc_1825 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 71.2 %
• Parental protein coverage: 91.73 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 6

Retrocopy - Parental Gene Alignment:

Parental  LNAEQLQKLLYLLELTEDPAIIERALVTLGNNAAFSANQVIIRELGGIPIVGSKIKDPNHSIKEKALNAL
          L.AE.L..LL.LLE.TE.P.IIE.ALVTL..N...SA...I.REL.GIPI.GSKI.DPNHS.KEKAL.A.
Retrocopy LDAEPLEELLHLLESTEHPIIIEKALVTLSSNVGSSAKHIILRELDGIPIIGSKIGDPNHSNKEKALKAR

Parental  SNLSVNVENQ-IKIKVYVNQVCEDVLSGPLNS-PVQLA-GLRLLTNMTVTNDHQHMFTNYITDLFQVLLA
          S.LSV.VEN...KIKV.V.QVCEDV.SGPLNS.PVQLA.GLR.LTNMTVTN.HQH....YIT..FQVLL.
Retrocopy SHLSVDVENK<MKIKVHVSQVCEDVFSGPLNS<PVQLA<GLRWLTNMTVTNNHQHTLNSYITG*FQVLLT

Parental  GNGTTKVQVLKLLLNLSENPAMTE-GLLGAQVDSSFLSLYDGHVAKEILLRALTLFQNINNCLKKEGHLT
          GN..TKVQVLKLLLN.SEN.A.TE.GLLG.QV.SS.LSL.DGHVAK.ILLR.LTLFQ...NCLKKEGHL.
Retrocopy GNRGTKVQVLKLLLNVSENAARTE<GLLGIQVGSSSLSL*DGHVAKGILLRGLTLFQDVSNCLKKEGHLA

Parental  VQPTFTQ-GSLFFLLYGEECAQKMRALV-NHHDADVKEKL
          .QPT.T...SLFFLLYGEE.AQ.M..LV..HHDADVK.K.
Retrocopy IQPTVTK<SSLFFLLYGEERAQEMGVLV<YHHDADVKAKV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1825 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 14 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000004247	1 retrocopy	retro_cfam_1264,
Choloepus hoffmanni	ENSCHOG00000002095	1 retrocopy	retro_chof_2665,
Callithrix jacchus	ENSCJAG00000021208	2 retrocopies	retro_cjac_1758, retro_cjac_2104,
Cavia porcellus	ENSCPOG00000019936	1 retrocopy	retro_cpor_1022,
Homo sapiens	ENSG00000170632	1 retrocopy	retro_hsap_2815,
Microcebus murinus	ENSMICG00000010160	1 retrocopy	retro_mmur_638,
Myotis lucifugus	ENSMLUG00000006088	3 retrocopies	retro_mluc_1587, retro_mluc_1825 , retro_mluc_624,
Mus musculus	ENSMUSG00000038525	3 retrocopies	retro_mmus_1292, retro_mmus_2256, retro_mmus_969,
Vicugna pacos	ENSVPAG00000008914	1 retrocopy	retro_vpac_19,