RetrogeneDB ID: retro_mluc_2565

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430967:76617..77448(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000008670
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: TRA2B
• Ensembl ID: ENSMLUG00000005781
• Aliases: None
• Description: None

Sequence

>retro_mluc_2565
GAGCGGGAATCCCGTTCTGCTTCCAGAAGTGGAAGTGCTCATGGATCTGGGACATCTGCGAGGCATACCCCTGCAAGGTC
TCGCTCCAAGGAAGATTCCAGGCGGCGTTCCAGATCAAAGTCCAGGTCCAGATCTGAATCTAGGTCTAGATCCAGAAGAA
GTTCTCGAAGGCGTGATTATCCAAGATCACCATCTCGGTCTCGCTCCCCTAGACGATCCCGTAGCAGGTCTGGCAGTCGA
GACTATCGGAGGCGTCACAGCCATGGTCATTCTCCCATGTCTACTCGCAGACGTCATGTCGGAAATCGGGCCAATCCTGC
TCCCAACTGTTGTCTTGGAGCCTTTGGATTGAGCTTGTACACGACAGAAAGAGATCTCAGAGAAGTCTTCTCTAAATATG
GCCCCCTTGCTGACGTGACTGTCGTCTATGACCAGCAATCTAGATGTTCAAGGGGATTTGCCTTCGTGTATTTTGAAAAT
GTAGATGACGCCAAGGAAGCAAGAGAGCGGGCCAATGGAATGGAGCTTGATGGACGTAGAATCAGAGTTGATTTCTCCAT
AACAAAAAGACCACATTCCCCCACACCAGGAATTTATATGGGGAGATCTACCTATGGCAGCTCGCGCCGTCGTGATTACT
ACCACAGAGGATACGATAGAGGCTATGATGATCGGGACTACTACAGCAGATCATACAGAGGAGGTGGAGGAGGATGGAGA
GCTGGACAAGACAGGGATCAGATTTACAGAAGGCGGTCACCTTCTCCTTACTATAGACGTGGAGAATATAGATCACGTTC
CAGATCACGATCACACTCACCTCGTCGCTAT

Alignment

ORF - retro_mluc_2565 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 85.0 %
• Parental protein coverage: 96.86 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  EKESRSASRSGSAHGSGKSARHTPARSRSKEDS-RRSRSKSRSRSESRSRSRRSSRRH-YTRSRSRSRSH
          E.ESRSASRSGSAHGSG.SARHTPARSRSKEDS.RR...............RRSSRR..Y.RS.SRSRS.
Retrocopy ERESRSASRSGSAHGSGTSARHTPARSRSKEDSRRRXXXXXXXXXXXXXXXRRSSRRRDYPRSPSRSRSP

Parental  RRSRSRSYSRDYRRRHSHSHSPMSTRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVS
          RRSRSRS.SRDYRRRHSH.HSPMSTRRRHVGNRANP.PNCCLG.FGLSLYTTERDLREVFSKYGP.ADV.
Retrocopy RRSRSRSGSRDYRRRHSHGHSPMSTRRRHVGNRANPAPNCCLGAFGLSLYTTERDLREVFSKYGPLADVT

Parental  IVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRR
          .VYDQQSR.SRGFAFVYFENVDDAKEA.ERANGMELDGRRIRVDFSITKRPH.PTPGIYMGR.TYGSSRR
Retrocopy VVYDQQSRCSRGFAFVYFENVDDAKEARERANGMELDGRRIRVDFSITKRPHSPTPGIYMGRSTYGSSRR

Parental  RDYYDRGYDRGYDDRDYYSRSYRGGGGGGGGWRAAQDRDQIYRRRSPSPYYSRGGYRSRSRSRSYSPRRY
          RDYY.RGYDRGYDDRDYYSRSYRGGGGG...WRA.QDRDQIYRRRSPSPYY.RG.YRSRSRSRS.SPRRY
Retrocopy RDYYHRGYDRGYDDRDYYSRSYRGGGGG---WRAGQDRDQIYRRRSPSPYYRRGEYRSRSRSRSHSPRRY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2565 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 25 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000001697	2 retrocopies	retro_btau_1245, retro_btau_850,
Myotis lucifugus	ENSMLUG00000003996	1 retrocopy	retro_mluc_1013,
Myotis lucifugus	ENSMLUG00000005781	2 retrocopies	retro_mluc_2565 , retro_mluc_2567,
Myotis lucifugus	ENSMLUG00000013209	5 retrocopies	retro_mluc_1630, retro_mluc_1746, retro_mluc_203, retro_mluc_2180, retro_mluc_80,
Myotis lucifugus	ENSMLUG00000015007	1 retrocopy	retro_mluc_1975,
Mustela putorius furo	ENSMPUG00000003157	1 retrocopy	retro_mputfur_673,
Mus musculus	ENSMUSG00000022858	6 retrocopies	retro_mmus_1187, retro_mmus_2253, retro_mmus_2313, retro_mmus_3139, retro_mmus_3617, retro_mmus_756,
Ochotona princeps	ENSOPRG00000007990	2 retrocopies	retro_opri_24, retro_opri_930,
Rattus norvegicus	ENSRNOG00000001783	4 retrocopies	retro_rnor_1130, retro_rnor_1915, retro_rnor_2156, retro_rnor_2807,
Tarsius syrichta	ENSTSYG00000000388	1 retrocopy	retro_tsyr_1632,