RetrogeneDB ID: retro_mluc_1982

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429975:1445728..1446333(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: EIF3M
• Ensembl ID: ENSMLUG00000014727
• Aliases: None
• Description: None

Sequence

>retro_mluc_1982
ATGAGCGTCCCCGCCTTCATCATCAGTGAGGAAGACCGGGCTGCTGAGCTACGAGCTTCTCTGAAATCCAAAGGCGCTGA
AGTTTCAGAAGAGAACTCAGAAGGTGGGCTTCATGCAGATTTAGCTCAGATTATTGAACCTGTGATGCACGTCTGAAGGA
AGATGATAAAGATGTTGAAAGTGTGATGAACAGCCTGGCAGCCCTCCTGTGGGTCTTGGAGCCAGAAAAGCAAGGAGCCC
TGATGGAAAACCTCTGTGAAAAGCTGGTCAAATTTCGGGAAGGCAAACGCCCATCTCTGAGACTGCAGTTGCTAAGCAAC
CTTGTCCACGGGATGGATGAGAATACGCCTGTAAGTTATACAGTATAGTGCAGCCTCATTGAAGTGGCAGCATCCTGTGG
GGCCATCCAGCATATTCCAGCTGAGCTGGGTCAGGTTAGAAAACGGATTTCTGACTGGAACCTCACCACTGAGAAAGCAC
ACACCCTTTGACGGCTACTTTCGGAGGCACGTGTGGGCTGTGAGAAAAGTGACGCCGCTCCAAAAGTCATGGTAGACTTG
CTAGGAAGCTACACGGAGGCCAGTGCTTCCCAGGCGCGAGTTGAG

Alignment

ORF - retro_mluc_1982 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 81.86 %
• Parental protein coverage: 54.28 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MSVPAFIDISEEDQAAELRAYLKSKGAEISEENSEGGLHVDLAQIIE-ACDVCLKEDDKDVESVMNSVVS
          MSVPAFI.ISEED.AAELRA.LKSKGAE.SEENSEGGLH.DLAQIIE..CD..LKEDDKDVESVMNS...
Retrocopy MSVPAFI-ISEEDRAAELRASLKSKGAEVSEENSEGGLHADLAQIIE<TCDARLKEDDKDVESVMNSLAA

Parental  LLLILEPEKQEALIENLCEKLVKFREGERPSLRLQLLSNLFHGMDKNTPVRYTVYCSLIKVAASCGAIQY
          LL..LEPEKQ.AL.ENLCEKLVKFREG.RPSLRLQLLSNL.HGMD.NTPV.YTV.CSLI.VAASCGAIQ.
Retrocopy LLWVLEPEKQGALMENLCEKLVKFREGKRPSLRLQLLSNLVHGMDENTPVSYTV*CSLIEVAASCGAIQH

Parental  IPTELDQVRKWISDWNLTTEKKHTLLRLLYEALVDCKKSDAASKVMVELLGSYTEDNASQARVD
          IP.EL.QVRK.ISDWNLTTEK.HTL.RLL.EA.V.C.KSDAA.KVMV.LLGSYTE..ASQARV.
Retrocopy IPAELGQVRKRISDWNLTTEKAHTL*RLLSEARVGCEKSDAAPKVMVDLLGSYTEASASQARVE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1982 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000005338	2 retrocopies	retro_btau_1736, retro_btau_812,
Echinops telfairi	ENSETEG00000013437	1 retrocopy	retro_etel_120,
Myotis lucifugus	ENSMLUG00000014727	2 retrocopies	retro_mluc_1982 , retro_mluc_431,
Mus musculus	ENSMUSG00000027170	1 retrocopy	retro_mmus_421,
Oryctolagus cuniculus	ENSOCUG00000004483	1 retrocopy	retro_ocun_282,
Otolemur garnettii	ENSOGAG00000015913	1 retrocopy	retro_ogar_1783,
Pteropus vampyrus	ENSPVAG00000015083	1 retrocopy	retro_pvam_1134,
Vicugna pacos	ENSVPAG00000007791	1 retrocopy	retro_vpac_342,