RetrogeneDB ID: retro_mluc_2308

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430191:382853..383708(+)
• Located in intron of: ENSMLUG00000011791

Retrocopy information

• Ensembl ID: ENSMLUG00000026994
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: UTP18
• Ensembl ID: ENSMLUG00000016938
• Aliases: None
• Description: None

Sequence

>retro_mluc_2308
AACTGCCTACATGCCAATGCTGCTCGGATCTCGTCTGTGCAGTTCCATCCTTGTGCTCAGGTGGTGATGGCTGCTGCACT
AGATAACTCTGTGTCACTGTTTCAGGTTGATGGGAAAACAAATCCTAAAATTCAGAGCATCTATTTGGAAAAGTTTCCAA
TCTTTAAGGCTCGTTTTAGTGCTAATGGAGAAGAGGTTTTAGCCACAAGTACCCACAGCAAGGTGCTTTATGTCTATGAT
ATGCTGGCTGGAAAGTTAATTCCAGGACATCAAGTGAGAGGTTTGAAAGAGAAGATAGTAAGGAAGTTTGATGTCTCCTC
AGATGGGTCCTTCTTGCTCATAAATGGCGTTGCTGGAGATTCTCATTTGCTGTCAATGAAGACTAAAGAATTGATTAGTA
GCATGAAAATAAATGGAAGGATTGCAGCATCCACGTTCTCTTCAGATAGTAAGAAAGTGTACGCCTCTTTGGCGGACAGG
GAAGTTTACGTTTGGGATGTGAACTCTAGGAAGTGCCTGGACAGGTTTGTTGATGAAGGCGGTTTATATGGATTGAGCAT
TGCAACATCTAGGAATGGACAGTATGTGGCTTGTGGTTCTAACTGCGGAGTGGTAAACATATACAGTCAAGATTCTTGTC
TCCAAGAAACAAACCCAAAGCCGATAAAAGCTATACTGAACTTGGTTACCGGTGTTTCTTCTTTGACCGTCAATCCTACC
ACAGAAATCTTGGCAATTGCTTCAGAAAAAATGAAAGAAGCAGTCAGATTGGTTCACCTTCCTTCCTGTACAGTATTTTC
AAACTTCCCAGTCTTTAAGCAGAAGAATATTTCTCTTGTGCATACCATGGATTTT

Alignment

ORF - retro_mluc_2308 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.58 %
• Parental protein coverage: 51.35 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  NAERPTTARISSVQFHPGAQVVMVAALDNSVSLFQVDGKTNPKIQSIYLEKFPIFKACFSANGEEVLATS
          N......ARISSVQFHP.AQVVM.AALDNSVSLFQVDGKTNPKIQSIYLEKFPIFKA.FSANGEEVLATS
Retrocopy NCLHANAARISSVQFHPCAQVVMAAALDNSVSLFQVDGKTNPKIQSIYLEKFPIFKARFSANGEEVLATS

Parental  THSKVLYVYDMLAGKLIPVHQVRGLKEKIVRSFEVSSDGSFLLINGVAGYFHLLSMKTKELISSMKVNGR
          THSKVLYVYDMLAGKLIP.HQVRGLKEKIVR.F.VSSDGSFLLINGVAG..HLLSMKTKELISSMK.NGR
Retrocopy THSKVLYVYDMLAGKLIPGHQVRGLKEKIVRKFDVSSDGSFLLINGVAGDSHLLSMKTKELISSMKINGR

Parental  IAASTFSSDSKKVYASSADGEVYVWDVNSRKCLNRFVDEGSLYGLSIAASRNGQYVACGSNCGVVNIYSQ
          IAASTFSSDSKKVYAS.AD.EVYVWDVNSRKCL.RFVDEG.LYGLSIA.SRNGQYVACGSNCGVVNIYSQ
Retrocopy IAASTFSSDSKKVYASLADREVYVWDVNSRKCLDRFVDEGGLYGLSIATSRNGQYVACGSNCGVVNIYSQ

Parental  DSCLQETNPKPIKAIMNLVTGVSSLTFNPTTEILAIASEKMKEAVRLVHLPSCTVFSNFPVSKQKNLSLV
          DSCLQETNPKPIKAI.NLVTGVSSLT.NPTTEILAIASEKMKEAVRLVHLPSCTVFSNFPV.KQKN.SLV
Retrocopy DSCLQETNPKPIKAILNLVTGVSSLTVNPTTEILAIASEKMKEAVRLVHLPSCTVFSNFPVFKQKNISLV

Parental  HTMDF
          HTMDF
Retrocopy HTMDF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2308 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000001477	1 retrocopy	retro_cpor_657,
Homo sapiens	ENSG00000011260	1 retrocopy	retro_hsap_1882,
Gorilla gorilla	ENSGGOG00000017061	1 retrocopy	retro_ggor_1379,
Myotis lucifugus	ENSMLUG00000016938	1 retrocopy	retro_mluc_2308 ,
Mustela putorius furo	ENSMPUG00000015582	1 retrocopy	retro_mputfur_646,
Vicugna pacos	ENSVPAG00000010164	1 retrocopy	retro_vpac_170,