RetrogeneDB ID: retro_mputfur_646

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896930.1:12141794..12143441(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: UTP18
• Ensembl ID: ENSMPUG00000015582
• Aliases: None
• Description: UTP18 small subunit (SSU) processome component homolog (yeast) [Source:HGNC Symbol;Acc:24274]

Sequence

>retro_mputfur_646
ATGCCGCCAGAACGTAGAAGCCGAACGAAACCGGACCGGAGACCCGGAGTGAGTCTGGACCGGAAGAGCCGAACGAAGCC
GGGCCGGAGAGCCGGAGCAGGGCCCCGCGGGCCGCCCCGAAAGGCTGCTCCTTCATCCCAGCGGAAACCGCCGGCCCGGC
CGAGCGCAGCGGTCGCTGCGATCGCAGTCGCGGCGGAGGAGGAGAGACGCCTCCGGCAGCGGAACCGCCTGACGCTGGAG
CAGGACAAACCGGCCGTGGAACGGTGCCTCGAGGAGCTGGTGTTCGGCGACGTCGAGGACAACGAGGACGCGTTGTTGCG
GCGTCTGCAGGGCTCGCGGGTTCAAGTGCAGGAAGACTCCGGTGACTCAGAAGCAAAAGATAATTTTCTGTTTCAAAAGA
AGCCAGTTTGGGTGGATGAAGAAGATGAAAATGATGAAATGGTTGACATGATGAGCAATCGGTTCCGGAAAGATATGATG
AAAAATGCCAGTGAAAGTAAACTTTCAAAAGACAAGCTTCAAAAAAGACTTAAGGAAGAATTCCAGCATGCCATGGGGGG
TGTACCTGCCTGGGCAGAGACTAGTAAGTGGAAGACATCTTCAGATGGTGAAAGTGAAGAGGATAAAGATGATTTGTTGC
AAAGGACTGGGAATTTCATATCTACATCAGCTTCTCTTCCTAAAGGAATCTTAAAGAATTGTCTCCATGCTAACGCGGAA
CGTCCTACCACGGCTCGGATCTCATCCGTGCAGTTCCATCCTTGTGCGCAAGTTGTAATGGTTGCCGCGCGAGATAATGC
CGTGTCGCTGTTTCAGGTTGATGGAAAAACAAATCCTAAAATCCAGAGCATCTATTTGGAGAAGTTTCCAATATTTAAGG
CCTGTTTTAGTGCTACTGGAGAAGAGGTTTTAGCCACGAGCATCCACAGCAAGGTTCTTTATGTCTATGATATGCTGGCT
GGAAAGCTAATTCCTGTGCATCAAGTGAGAGGTTTGAAAGAGAAGATAGTTAGGAGCTTCGAAGTGTCTCCAGATGGGTC
CTTCTTGCTGATAAATGGTGTTGCTGGATATCTTCATTTGCTGTCAATGAAGACCAAAGAACTGATTGGTAGCATGAAAA
TTAATGGAAGGGTTGCAGCATCCACGTTCTCTTCAGATAGCAAGAAACTATAGGCCTCTTCAGGCGATGGGGAAGTTTAT
GTTTGGGATGTGAACTCCAGAAAATGCCTTAACAGATTTGTTGATGAAGGCAGTTTATATGGATTAAGCATTGCCACATC
TAGGAATGGACAGTATGTGGCTTGTGGTTCTAATTGTGGAGTGGTAAACATATACAATCAAGATTCTTGTCTTCAAGAAA
CAAATCCAAAGCCGATAAAAGCTATAATGAACTTGGTTACAGGTGTTACTTCTCTGAGCTTCAATCCTACTACAGAAATC
TTGGCAATTGCTTCAGAAGAAATGAAAGAAGCGGTCAGATTGGTTCACCTTCCCTCCTGTACAGTATTTTCAAACTTCCC
AGTCATTAAAAAGAAGACTGTTTCTCTTGTTCATACCATGGATTTTTCTCCCAGAAGTGGGTATTTTGCCTTGGGGAATG
AAAAGGGCAAGGCCCTGCTCTATAGGTTGCACCATTACTCAGAATTC

Alignment

ORF - retro_mputfur_646 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 97.66 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MPPERRSRTKPDRRPGVSLDRKSRTKPGRRAGAGPGGPPRKAAPSSQRKPPARPSAAAAAIAVAAEEERR
          MPPERRSRTKPDRRPGVSLDRKSRTKPGRRAGAGP.GPPRKAAPSSQRKPPARPSAA.AAIAVAAEEERR
Retrocopy MPPERRSRTKPDRRPGVSLDRKSRTKPGRRAGAGPRGPPRKAAPSSQRKPPARPSAAVAAIAVAAEEERR

Parental  LRQRNRLTLEEDKPAVERCLEELVFGDVEDNEDALLRRLQGSRVQVQEDSGDSEVENEAKDNFLFQKKPV
          LRQRNRLTLE.DKPAVERCLEELVFGDVEDNEDALLRRLQGSRVQVQEDSGDS....EAKDNFLFQKKPV
Retrocopy LRQRNRLTLEQDKPAVERCLEELVFGDVEDNEDALLRRLQGSRVQVQEDSGDS----EAKDNFLFQKKPV

Parental  WVDEEDENDEMVDMMSNRFRKDMMKNASESKLSKDKLQKRLKEEFQHAMGGVPAWAETSKRKTSSDGESE
          WVDEEDENDEMVDMMSNRFRKDMMKNASESKLSKDKLQKRLKEEFQHAMGGVPAWAETSK.KTSSDGESE
Retrocopy WVDEEDENDEMVDMMSNRFRKDMMKNASESKLSKDKLQKRLKEEFQHAMGGVPAWAETSKWKTSSDGESE

Parental  EDEDDLLQRTGNFISTSASLPKGILKVKNCLHANAERPTTARISSVQFHPCAQVVMVAARDNAVSLFQVD
          ED.DDLLQRTGNFISTSASLPKGIL..KNCLHANAERPTTARISSVQFHPCAQVVMVAARDNAVSLFQVD
Retrocopy EDKDDLLQRTGNFISTSASLPKGIL--KNCLHANAERPTTARISSVQFHPCAQVVMVAARDNAVSLFQVD

Parental  GKTNPKIQSIYLEKFPIFKACFSATGEEVLATSIHSKVLYVYDMLAGKLIPVHQVRGLKEKIVRSFEVSP
          GKTNPKIQSIYLEKFPIFKACFSATGEEVLATSIHSKVLYVYDMLAGKLIPVHQVRGLKEKIVRSFEVSP
Retrocopy GKTNPKIQSIYLEKFPIFKACFSATGEEVLATSIHSKVLYVYDMLAGKLIPVHQVRGLKEKIVRSFEVSP

Parental  DGSFLLINGVAGYLHLLSMKTKELIGSMKINGRVAASTFSSDSKKLYASSGDGEVYVWDVNSRKCLNRFV
          DGSFLLINGVAGYLHLLSMKTKELIGSMKINGRVAASTFSSDSKKL.ASSGDGEVYVWDVNSRKCLNRFV
Retrocopy DGSFLLINGVAGYLHLLSMKTKELIGSMKINGRVAASTFSSDSKKL*ASSGDGEVYVWDVNSRKCLNRFV

Parental  DEGSLYGLSIATSRNGQYVACGSNCGVVNIYNQDSCLQETNPKPVKAIMNLVTGVTSLSFNPTTEILAIA
          DEGSLYGLSIATSRNGQYVACGSNCGVVNIYNQDSCLQETNPKP.KAIMNLVTGVTSLSFNPTTEILAIA
Retrocopy DEGSLYGLSIATSRNGQYVACGSNCGVVNIYNQDSCLQETNPKPIKAIMNLVTGVTSLSFNPTTEILAIA

Parental  SEEMKEAVRLVHLPSCTVFSNFPVIKKKTVSLVHTMDFSPRSGYFALGNEKGKALLYRLHHYSEF
          SEEMKEAVRLVHLPSCTVFSNFPVIKKKTVSLVHTMDFSPRSGYFALGNEKGKALLYRLHHYSEF
Retrocopy SEEMKEAVRLVHLPSCTVFSNFPVIKKKTVSLVHTMDFSPRSGYFALGNEKGKALLYRLHHYSEF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_646 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_646 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000001477	1 retrocopy	retro_cpor_657,
Homo sapiens	ENSG00000011260	1 retrocopy	retro_hsap_1882,
Gorilla gorilla	ENSGGOG00000017061	1 retrocopy	retro_ggor_1379,
Myotis lucifugus	ENSMLUG00000016938	1 retrocopy	retro_mluc_2308,
Mustela putorius furo	ENSMPUG00000015582	1 retrocopy	retro_mputfur_646 ,
Vicugna pacos	ENSVPAG00000010164	1 retrocopy	retro_vpac_170,