RetrogeneDB ID: retro_mluc_2351

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430238:370711..371557(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: GYG1
• Ensembl ID: ENSMLUG00000006382
• Aliases: None
• Description: None

Sequence

>retro_mluc_2351
AGGACAGTTTTAGAGACAGTCTTCGATGAAGTCCTCCTGGCAGATGTTTGGACAGTGGCGATTCTGCTCATCTGACCGCA
ATGAAGAGGCCTGAGTTGAGTGTTACCTTAACTAAGCTCCACTGCTGGTCACTTACACAATTTTCAAAATGTGTGTTCGT
GGGTGCAGATACCCTGGTCCTCGCAAATATTGATGATCTTTTTGAGAGAGAATTGTCGGCGGCTCCAGCCCCGGCTGGCC
TGACTGCTGCAATCCCAGAGTCTTTGTGTGTCAGCCTTCAGTGTAAGCGTACAGCCAGCTGCCGTGGCTGCTTCCGAGCA
GGTAGTTTTGATGGTGGGGACCAAGGTTTCCTGGACATGTGTTTTAGCAGCTGGGCAACATCAGCTACCAGACAACACCT
GCCATGTATTTACAACCTAAGCAGCATTTCTGTATGCTCCTACCTCCCAGCATTTAAAGCATTTGGTGCAAATGCCAAAG
TTGTGCATTTCCTGGGACGAATCAAACCGTGGAATTATACCTATGATCCTAAAACAAAAAGTGTCAAAAGTGAGTCCCAT
GATCCCACCATGACTCACCCTGAGTCCCTCAGCCTGGGGTGGGGCACCTTCACCACCAGCGCTCACCCTGCCGCAGCGCC
CGGCCTCATCTCAGACCCCCACCCACACCTCAGGGTGGAAGATGTCTGGGAGCCGTGTCACATTGTCCCCTGGGGAGACC
CCGGCTACGGCACAGCCTTTTGTATCCTCAGAAAAACGGAAGGAGAGGTGGGAACGGGGCCAGGCTGATGACATGGGAGC
AGATTCCTTTGCCAACATCAAGAGGAAACTTGCCGCTTACCTCCAA

Alignment

ORF - retro_mluc_2351 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 80.48 %
• Parental protein coverage: 86.4 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 6

Retrocopy - Parental Gene Alignment:

Parental  RKVLETVFDEVIMVDV-LDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFE
          R.VLETVFDEV...DV.LDSGDSAHLT.MKRPEL.VTLTKLHCWSLTQ.SKCVF..ADTLVLANIDDLFE
Retrocopy RTVLETVFDEVLLADV<LDSGDSAHLTAMKRPELSVTLTKLHCWSLTQFSKCVFVGADTLVLANIDDLFE

Parental  REELSAAP-DPGWPDCFNSGVFVYQPSVETYSQL-LRVASEQ-GSFDGGDQGLLNMFFSSWATTDIRKHL
          RE.LSAAP..PGWPDC.N..VFV.QPSV..YSQL....ASEQ.GSFDGGDQG.L.M.FSSWAT...R.HL
Retrocopy RE-LSAAP<SPGWPDCCNPRVFVCQPSV*AYSQL<AVAASEQ<GSFDGGDQGFLDMCFSSWATSATRQHL

Parental  PFIYNLSSISIYSYLPAFKAFGANAKVVHFLGRIKPWNYTYDPKTKSVKSESHDPTMTHPEFLSLWWDIF
          P.IYNLSSIS..SYLPAFKAFGANAKVVHFLGRIKPWNYTYDPKTKSVKSESHDPTMTHPE.LSL.W..F
Retrocopy PCIYNLSSISVCSYLPAFKAFGANAKVVHFLGRIKPWNYTYDPKTKSVKSESHDPTMTHPESLSLGWGTF

Parental  TTSVSPLLQQFGLISDTHPHLNVEDV-SGAVSH-LSLGETPATAQPFVSSEERKERWEQGQADYMGADSF
          TTS..P.....GLISD.HPHL.VEDV..GAVSH.LS.GETPATAQPFVSSE.RKERWE.GQAD.MGADSF
Retrocopy TTSAHPAAAP-GLISDPHPHLRVEDV<LGAVSH<LSPGETPATAQPFVSSEKRKERWERGQADDMGADSF

Parental  DNIKRKLDTYLQ
          .NIKRKL..YLQ
Retrocopy ANIKRKLAAYLQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2351 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 14 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000001467	2 retrocopies	retro_cjac_1049, retro_cjac_2915,
Danio rerio	ENSDARG00000011934	1 retrocopy	retro_drer_23,
Homo sapiens	ENSG00000163754	2 retrocopies	retro_hsap_1222, retro_hsap_159,
Myotis lucifugus	ENSMLUG00000006382	1 retrocopy	retro_mluc_2351 ,
Macaca mulatta	ENSMMUG00000005521	2 retrocopies	retro_mmul_1297, retro_mmul_376,
Nomascus leucogenys	ENSNLEG00000002557	2 retrocopies	retro_nleu_1556, retro_nleu_693,
Oryctolagus cuniculus	ENSOCUG00000003516	1 retrocopy	retro_ocun_1766,
Pongo abelii	ENSPPYG00000025899	2 retrocopies	retro_pabe_1015, retro_pabe_1080,
Pan troglodytes	ENSPTRG00000015509	1 retrocopy	retro_ptro_836,