RetrogeneDB ID: retro_mluc_2608

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL431682:29507..29783(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CBY1
• Ensembl ID: ENSMLUG00000003757
• Aliases: None
• Description: None

Sequence

>retro_mluc_2608
ATGCCTCTCTTTGGGAATACGTTCAGTCCAAAGAAGACTCCCCCTCAGAAGTCTGCTTCTCTCTCCAACCTGCATAATCT
GGATCGGTCCACCAGCGAAGTGGAGCTGGGCCTCTAATATGGAACCCCCACTATGAACCTGGCGGGACAAAGCCTGAAGT
TTGAAAATGGCCATTGGGTAGCAGAGACTGGGATCAGTGGAGGTGTGGACCAGAGGGAGGTTCAGTGCCTCCGGAAGCGG
AACCAGCAGTTGGAGGAGGAGAACAACCTCTTGCAG

Alignment

ORF - retro_mluc_2608 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.57 %
• Parental protein coverage: 72.44 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MPLFGNTFSPKKTPPRKSASLSNLHNLDRSTREVELGLDYGTPTMNLAGQSLKFENGHWVAETGISGGVD
          MPLFGNTFSPKKTPP.KSASLSNLHNLDRST.EVELGL.YGTPTMNLAGQSLKFENGHWVAETGISGGVD
Retrocopy MPLFGNTFSPKKTPPQKSASLSNLHNLDRSTSEVELGL*YGTPTMNLAGQSLKFENGHWVAETGISGGVD

Parental  QREAQRLRKRNQQLEEENNLLQ
          QRE.Q.LRKRNQQLEEENNLLQ
Retrocopy QREVQCLRKRNQQLEEENNLLQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2608 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000001384	2 retrocopies	retro_cfam_1396, retro_cfam_852,
Dasypus novemcinctus	ENSDNOG00000010982	1 retrocopy	retro_dnov_875,
Homo sapiens	ENSG00000100211	1 retrocopy	retro_hsap_2344,
Gorilla gorilla	ENSGGOG00000013226	1 retrocopy	retro_ggor_1781,
Myotis lucifugus	ENSMLUG00000003757	2 retrocopies	retro_mluc_1128, retro_mluc_2608 ,
Mustela putorius furo	ENSMPUG00000013150	1 retrocopy	retro_mputfur_1186,
Nomascus leucogenys	ENSNLEG00000015153	1 retrocopy	retro_nleu_349,
Otolemur garnettii	ENSOGAG00000028533	1 retrocopy	retro_ogar_1072,
Pan troglodytes	ENSPTRG00000014373	1 retrocopy	retro_ptro_1716,
Vicugna pacos	ENSVPAG00000001484	1 retrocopy	retro_vpac_57,