RetrogeneDB ID: retro_ogar_1072

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873535.1:14417993..14418278(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CBY1
• Ensembl ID: ENSOGAG00000028533
• Aliases: None
• Description: chibby homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:1307]

Sequence

>retro_ogar_1072
ATGCCTCTCTTTGGAAATGCATTCAGTACAAAGTAGACAACTCCTTGGAAGTCTGCCTCTCTCTCCCACCTGTATTCCTT
GGATCATTGAACTCAGGTGGTAGAGCTAGGCCTTGACTATGGAATCCCCACTATGAACCTGGCAGGGAAAAGCTTGAAGT
TTAAAAATTGCCAATAGATAGCAGAGACAGGGATTAATGGAGATGTGGACCAGAGGTAGGCTCAGAGTCTTGGTAGGTAG
AACCAACAGCTGGAGGAATAGAACAATCTCTTGTGGCTGAAAGTG

Alignment

ORF - retro_ogar_1072 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 73.68 %
• Parental protein coverage: 74.8 %
• Number of stop codons detected: 6
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MPLFGNTFSPKKTPPRKSASLSNLHSLDRSTREVELGLDYGTPTMNLAGQSLKFENGQWIAETGISGGVD
          MPLFGN.FS.K.T.P.KSASLS.L.SLD..T..VELGLDYG.PTMNLAG.SLKF.N.Q.IAETGI.G.VD
Retrocopy MPLFGNAFSTK*TTPWKSASLSHLYSLDH*TQVVELGLDYGIPTMNLAGKSLKFKNCQ*IAETGINGDVD

Parental  RREAQRLRRRNQQLEEENNLLRLKV
          .R.AQ.L.R.NQQLEE.NNLL.LKV
Retrocopy QR*AQSLGR*NQQLEE*NNLLWLKV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_1072 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000001384	2 retrocopies	retro_cfam_1396, retro_cfam_852,
Dasypus novemcinctus	ENSDNOG00000010982	1 retrocopy	retro_dnov_875,
Homo sapiens	ENSG00000100211	1 retrocopy	retro_hsap_2344,
Gorilla gorilla	ENSGGOG00000013226	1 retrocopy	retro_ggor_1781,
Myotis lucifugus	ENSMLUG00000003757	2 retrocopies	retro_mluc_1128, retro_mluc_2608,
Mustela putorius furo	ENSMPUG00000013150	1 retrocopy	retro_mputfur_1186,
Nomascus leucogenys	ENSNLEG00000015153	1 retrocopy	retro_nleu_349,
Otolemur garnettii	ENSOGAG00000028533	1 retrocopy	retro_ogar_1072 ,
Pan troglodytes	ENSPTRG00000014373	1 retrocopy	retro_ptro_1716,
Vicugna pacos	ENSVPAG00000001484	1 retrocopy	retro_vpac_57,