RetrogeneDB ID: | retro_mluc_2609 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL431690:9008..10066(+) | ||
Located in intron of: | ENSMLUG00000010875 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMLUG00000000586 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 81.74 % |
Parental protein coverage: | 87.87 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | IEQQKRKGPELPLVPVKRQRHELMLGAAGSGPGAGQQPPAPGALLQAGPPRCSSLQAPIMLLSGHEGEVY |
.EQQKRKGPELPLVPVK.QRHEL.LGAAGSGPGAGQQ..APGALLQAGPPRCSSLQAPIMLLSGHEG.VY | |
Retrocopy | MEQQKRKGPELPLVPVKGQRHELLLGAAGSGPGAGQQQAAPGALLQAGPPRCSSLQAPIMLLSGHEGDVY |
Parental | CCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDK-TVAVWDSE |
CCKFHPNGSTLASAGFD.L.LL..VYGDCDNYATLKGH.GAVM...YNTDGS.LFSASTDK.TVA.WDSE | |
Retrocopy | CCKFHPNGSTLASAGFDPLMLL*KVYGDCDNYATLKGHGGAVMD--YNTDGSLLFSASTDK<TVAAWDSE |
Parental | TGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQII |
TGERVKRLKG.TSFVNSC.PARRGPQ.V.TGSDDGTVKLW..RK.AA.QTFQNT.Q.LAVTFNDTS.QII | |
Retrocopy | TGERVKRLKGRTSFVNSCDPARRGPQRVGTGSDDGTVKLWGMRKRAAMQTFQNTSQGLAVTFNDTSHQII |
Parental | SGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQG |
.GG.DNDIKVWDLRQN.LT.T.RGHA.SVTG.S..SEGSYLLS.A.DNTVR..DVRPFAPKERCVK.FQG | |
Retrocopy | PGGTDNDIKVWDLRQNELTDTTRGHAESVTGPSVRSEGSYLLSDATDNTVRARDVRPFAPKERCVKTFQG |
Parental | NVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPISKSVLTLG |
.VHNFEKNLLRCSWSP.GSK.AAGSADRFVYV.DTTSRR..YK.PGHAG.I.EVA.HP.EPI..S..... | |
Retrocopy | SVHNFEKNLLRCSWSPEGSKMAAGSADRFVYVCDTTSRRMWYKRPGHAGPISEVALHPGEPIAPSASSAK |
Parental | KRKLWE |
.....E | |
Retrocopy | RLNMGE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Myotis lucifugus | ENSMLUG00000000586 | 3 retrocopies |
retro_mluc_2200, retro_mluc_2609 , retro_mluc_318,
|
Myotis lucifugus | ENSMLUG00000002236 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000015309 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000016097 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000019406 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000012219 | 1 retrocopy |