Parental gene: | Snrnp40, ENSRNOG00000012219 |
| Aliases: | Snrnp40, RGD1309198 |
| Description: | U5 small nuclear ribonucleoprotein 40 kDa protein [Source:RefSeq peptide;Acc:NP_001128028] |
| Organism: | Rat (Rattus norvegicus) |
| Coordinates: | 5:152294723..152327111(+) |
>ENSRNOG00000012219
ATGATCGAGCAGCAGAAACGCAAGGGCCCAGAGCTACCCCTGGTTCCCGTCAAGCGGCCGCGACATGAGTTGCTGTTGGG
AGCCGCAGGATCCGGCCCCGGAGCCGGGCAACAGCAGGCGACTCCGGGGGCATTGCTGCAGACGGGACCGCCAAGGTGTT
CGTCCCTTCAAGCCCCCATCATGCTGCTCTCAGGACACGAAGGGGAAGTGTATTGCTGCAAGTTTCACCCCAATGGATCT
ACCCTGGCTTCTGCAGGATTTGACCGACTCATACTACTGTGGAGCGTCTATGGAGACTGTGACAACTATGCTACGTTGAA
GGGACACAGCGGAGCAGTAATGGAGCTGCACTACAACACAGACGGCAGCATGCTCTTCTCAGCATCAACAGATAAAACTG
TGGCAGTGTGGGATAGTGAAACAGGAGAGAGAGTTAAAAGGCTAAAAGGGCATACTTCCTTTGTGAACTCCTGTTATCCA
GCCAGGCGGGGGCCCCAGCTTGTCTGCACAGGCAGCGACGATGGCACAGTTAAGCTTTGGGACATCCGGAAGAAAGCAGC
CATCCAGACATTTCAGAACACATACCAGGTGTTAGCCGTCACCTTCAATGACACGAGCGATCAGATCATCTCTGGCGGAA
TAGACAATGACATCAAGGTTTGGGACCTACGCCAAAACAAGTTAACCTACACCATGAGAGGCCATGCCGACTCTGTAACT
GGCTTGAGCTTGAGTTCTGAAGGATCTTATCTCTTGTCCAATGCAATGGACAACACAGTGCGTGTCTGGGATGTCCGGCC
ATTTGCTCCCAAAGAGAGATGTGTGAAGATATTTCAAGGAAATGTCCACAACTTTGAAAAGAACCTCCTGAGGTGTTCCT
GGTCACCAGACGGAAGCAAGATAGCAGCTGGCTCAGCAGACAGGTTTGTGTACGTGTGGGACACCACAAGCAGAAGGATC
CTGTATAAGCTTCCTGGTCATGCTGGCTCCATCAATGAGGTGGCCTTCCATCCCGATGAGCCCATCATCCTCTCAGCATC
CAGTGACAAGAGGCTGTACATGGGTGAGATCCAGTGA
ATGATCGAGCAGCAGAAACGCAAGGGCCCAGAGCTACCCCTGGTTCCCGTCAAGCGGCCGCGACATGAGTTGCTGTTGGG
AGCCGCAGGATCCGGCCCCGGAGCCGGGCAACAGCAGGCGACTCCGGGGGCATTGCTGCAGACGGGACCGCCAAGGTGTT
CGTCCCTTCAAGCCCCCATCATGCTGCTCTCAGGACACGAAGGGGAAGTGTATTGCTGCAAGTTTCACCCCAATGGATCT
ACCCTGGCTTCTGCAGGATTTGACCGACTCATACTACTGTGGAGCGTCTATGGAGACTGTGACAACTATGCTACGTTGAA
GGGACACAGCGGAGCAGTAATGGAGCTGCACTACAACACAGACGGCAGCATGCTCTTCTCAGCATCAACAGATAAAACTG
TGGCAGTGTGGGATAGTGAAACAGGAGAGAGAGTTAAAAGGCTAAAAGGGCATACTTCCTTTGTGAACTCCTGTTATCCA
GCCAGGCGGGGGCCCCAGCTTGTCTGCACAGGCAGCGACGATGGCACAGTTAAGCTTTGGGACATCCGGAAGAAAGCAGC
CATCCAGACATTTCAGAACACATACCAGGTGTTAGCCGTCACCTTCAATGACACGAGCGATCAGATCATCTCTGGCGGAA
TAGACAATGACATCAAGGTTTGGGACCTACGCCAAAACAAGTTAACCTACACCATGAGAGGCCATGCCGACTCTGTAACT
GGCTTGAGCTTGAGTTCTGAAGGATCTTATCTCTTGTCCAATGCAATGGACAACACAGTGCGTGTCTGGGATGTCCGGCC
ATTTGCTCCCAAAGAGAGATGTGTGAAGATATTTCAAGGAAATGTCCACAACTTTGAAAAGAACCTCCTGAGGTGTTCCT
GGTCACCAGACGGAAGCAAGATAGCAGCTGGCTCAGCAGACAGGTTTGTGTACGTGTGGGACACCACAAGCAGAAGGATC
CTGTATAAGCTTCCTGGTCATGCTGGCTCCATCAATGAGGTGGCCTTCCATCCCGATGAGCCCATCATCCTCTCAGCATC
CAGTGACAAGAGGCTGTACATGGGTGAGATCCAGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 7 .93 RPM |
| SRP017611_kidney | 10 .12 RPM |
| SRP017611_brain | 14 .38 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Myotis lucifugus | ENSMLUG00000000586 | possible_ortholog | 3 retrogenes | |
| Macaca mulatta | ENSMMUG00000019406 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000008212 | within_species_paralog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_rnor_2604 | 85.58 | 60.06 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSRNOG00000012219 retrocopies