RetrogeneDB ID: retro_mluc_318

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429871:2258057..2259134(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000030695
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000000586
• Aliases: None
• Description: None

Sequence

>retro_mluc_318
ATGATTGAACAACAGAAGCGCAAGGGTCCGAAGTTGCCGCTGGTTCCAGTCAAGAGGCAGCGGCAGGAGCTGATGTTGGG
AGCGGCAGGGTCGGGCCCTGGAGCGGGACAGCAGCTGGTGGCGCCGGGAACTCTGCTGCAAGCGGGGCCTCCAAGGTGTT
CCTCCCTTCAAGCCCTAATCATGCTTCTCTCGGGACATGAAGGGGAAGTGTACTGCTGCAAGTTTCACCCCAATGGATCC
ACCTTACCATCTGCAGGATTCGACCGACTGATATTGTTGTGGAATGTCTATGGTGACTGTGATAACTGTGCAACATTGAA
GGGGCACAGTGGAGCAGTGATGGAACTGTATTATAACATGGATGGCAGTCTGCTCTTCTCAGCATCCACAGATAAAACTG
TGGCAGTGTGGGATAGTGAAACAGGTGAGAGGGTGAAAAGGCTGAAAGGACATACTTCCTTTGTGAATTCCTGTTATCTG
GCCAGGAGGGGCCCCCAGCCTGTCTGCACTGGCAGTGATGATGGTACAGTTAAGCTTTGGGACATCCGGAAGAAAGCAGC
TATCCAGACATTTCAGAATACCTACCAGGTGTTAGCTGTGACCTTCAATGACACAAGCGATCAGATTATTTCCGGTGGAA
TAGATAATGATATCAAGGTCTGGGACCTGCGTCAAAACAAGCTGACCTACACCATGAGAGGCCATGCAGATTCAGTGACG
GGCCTGAGTTTAAGTTCTGAGGGCTCTTATCTTCTGTCCAATGCAATGGACAATACAGTGCTGGTTTGGGATGTCCGGCC
ATTTGCTCCCAAAGAGAGATGTGTCAAGATATTTCAAGGAAATGTGCACAACTTTGAAAAGAATCTTCTAAGATGTTCTT
GGTCACCTGATGGAAGCAAGATAGCAGCTGGCTCAGCCGACAGGTCTGTGTATGTGTGGGATACAACAAGCAGGAGGATT
TTGTATAAGCTTCCGAGCCACGCTGGATCCATCAATGAAGTGGCTTTCCACTCTGACGAGCCCATCATTCTCTCAGCATC
CAGTGACAAGAGACTGTATATGGGGGAGATCCAGTGA

Alignment

ORF - retro_mluc_318 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.03 %
• Parental protein coverage: 84.65 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MIEQQKRKGPELPLVPVKRQRHELMLGAAGSGPGAGQQPPAPGALLQAGPPRCSSLQAPIMLLSGHEGEV
          MIEQQKRKGP.LPLVPVKRQR.ELMLGAAGSGPGAGQQ..APG.LLQAGPPRCSSLQA.IMLLSGHEGEV
Retrocopy MIEQQKRKGPKLPLVPVKRQRQELMLGAAGSGPGAGQQLVAPGTLLQAGPPRCSSLQALIMLLSGHEGEV

Parental  YCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSE
          YCCKFHPNGSTL.SAGFDRLILLWNVYGDCDN.ATLKGHSGAVMEL.YN.DGS.LFSASTDKTVAVWDSE
Retrocopy YCCKFHPNGSTLPSAGFDRLILLWNVYGDCDNCATLKGHSGAVMELYYNMDGSLLFSASTDKTVAVWDSE

Parental  TGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQII
          TGERVKRLKGHTSFVNSCY.ARRGPQ.VCTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQII
Retrocopy TGERVKRLKGHTSFVNSCYLARRGPQPVCTGSDDGTVKLWDIRKKAAIQTFQNTYQVLAVTFNDTSDQII

Parental  SGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQG
          SGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTV.VWDVRPFAPKERCVKIFQG
Retrocopy SGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVLVWDVRPFAPKERCVKIFQG

Parental  NVHNFEKNLLRCSWSPDGSKIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPI
          NVHNFEKNLLRCSWSPDGSKIAAGSADR.VYVWDTTSRRILYKLP.HAGSINEVAFH.DEPI
Retrocopy NVHNFEKNLLRCSWSPDGSKIAAGSADRSVYVWDTTSRRILYKLPSHAGSINEVAFHSDEPI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_318 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000000586	3 retrocopies	retro_mluc_2200, retro_mluc_2609, retro_mluc_318 ,
Myotis lucifugus	ENSMLUG00000002236	1 retrocopy	retro_mluc_11,
Myotis lucifugus	ENSMLUG00000015309	1 retrocopy	retro_mluc_77,
Myotis lucifugus	ENSMLUG00000016097	1 retrocopy	retro_mluc_213,
Macaca mulatta	ENSMMUG00000019406	1 retrocopy	retro_mmul_1461,
Rattus norvegicus	ENSRNOG00000012219	1 retrocopy	retro_rnor_2604,