RetrogeneDB ID: retro_mluc_590

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429769:3227764..3228359(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MAK16
• Ensembl ID: ENSMLUG00000002758
• Aliases: None
• Description: None

Sequence

>retro_mluc_590
ATGCAGTCTGATGACGTTATCTGGAATACATTAGGAAACAAGTAACTTTGCTCCTTCGAAATAAGAACTAAGACACAGAG
CTTTTGCAGAACTGAATACAGCCTGACTAGACTGTGTAACCTATTGCCTTGTCCCCTGGTAAACAATTAGTATGCCACTA
TCAAAGAAGATAAAGGACAGTGCTAGTTGTATATGAAGGTGATAAAACAGGTAGCTTTTCCTAGGCATCTCTGGGAACGA
GTCTGGCTTCATAATAATGATGAGAAAGCATTAGAGCCAATAGATGAAAATCTAATTTACTGGCCCCATTTCATTCAACA
CAAGTGTAAGCTGAGTTTCACCATGATTACCCAGTACCTACTTTGAATTTGAAAACTTACACTAAAGTGACAGGGGAAAC
TTGTTCCTTTGAGTGAGAAGGTGGAGCAGAGGGGAAAAAAGAAGAGAGGAAAAGGCATTAATCGCTGCTCAGCTGGACAA
TGTCATTGAAAAGGAATTGCTGGGGAGACTTAAACAAGGTATGTATGGGGACATCTACAACTTCCCCATTCATGCCTTGG
ACAAGGCCGTGGAATAGCAGGAGGCAGAGAGTGAC

Alignment

ORF - retro_mluc_590 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 77.89 %
• Parental protein coverage: 66.44 %
• Number of stop codons detected: 7
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MQSDDVIWDTLGNKQFCSFKIRTKTQGFCRNEYSLTGLCNRSSCPLANSQYATIKEEKGQCFLYMKVIER
          MQSDDVIW.TLGNK..CSF.IRTKTQ.FCR.EYSLT.LCN...CPL.N..YATIKE.KGQC.LYMKVI..
Retrocopy MQSDDVIWNTLGNK*LCSFEIRTKTQSFCRTEYSLTRLCNLLPCPLVNN*YATIKEDKGQC*LYMKVIKQ

Parental  AAFPRRLWERVRLHKNYEKALEQIDENLIYWPRFIRHKCKQRFTKITQYLIRIRKLTLKRQRKLVPLSKK
          .AFPR.LWERV.LH.N.EKALE.IDENLIYWP.FI.HKCK..FT.ITQYL..I.KLTLK.Q.KLVPLS.K
Retrocopy VAFPRHLWERVWLHNNDEKALEPIDENLIYWPHFIQHKCKLSFTMITQYLL*I*KLTLK*QGKLVPLSEK

Parental  VERR-EKRREEKALIAAQLDNAIEKELLERLKQDTYGDIYNFPIHAFDKALEQQEAGSD
          VE.R.EKRREEKALIAAQLDN.IEKELL.RLKQ..YGDIYNFPIHA.DKA.E.QEA.SD
Retrocopy VEQR>EKRREEKALIAAQLDNVIEKELLGRLKQGMYGDIYNFPIHALDKAVE*QEAESD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_590 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000009081	5 retrocopies	retro_chof_2336, retro_chof_2538, retro_chof_531, retro_chof_867, retro_chof_948,
Dasypus novemcinctus	ENSDNOG00000008424	1 retrocopy	retro_dnov_624,
Latimeria chalumnae	ENSLACG00000018758	1 retrocopy	retro_lcha_67,
Macropus eugenii	ENSMEUG00000006945	1 retrocopy	retro_meug_1291,
Myotis lucifugus	ENSMLUG00000002758	1 retrocopy	retro_mluc_590 ,
Oryctolagus cuniculus	ENSOCUG00000008735	3 retrocopies	retro_ocun_1053, retro_ocun_1298, retro_ocun_908,
Sus scrofa	ENSSSCG00000015832	1 retrocopy	retro_sscr_917,