RetrogeneDB ID: retro_mluc_626

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429769:7600612..7601206(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000025196
• Aliases: None
• Description: None

Sequence

>retro_mluc_626
TTTTTATCTCATATTAGTGCCTGTGATGGAATCATTAATCTAACACATGCTTTTGAAGATGAGGCTATCATGCATGTTGA
ACGAAGTGTAGGTCCTATTCAAGATACAGAAATAATACATGAAGAGCTTCAGCTTAAAGGTGACTAAATGATTGGGCCCA
TTATAAATAAACTAGAAAAGTGGTTGTGAAAGGATGAGATTAAAAACTATAACCTGAATATGACATAATGTGTAAGGTTA
AATCCTGGGTTATAGATAAAAAGAAACCTATACCCCTCTATCCTGATTGGAATGACAAAAAGATTGAAGTGCAGAAAAAA
CACTTGTTTCTGACTTCAAAAGAAATGGTCTATTTTGTTAATCTTTATGAAAAATACTACATTAAAAAGAAAAACAAATG
GTTGATAAAAATTAAAGAGTGTGTGGACAAATATGACCCAGGTGCCTTCGTCATTCCTTTTAGTGGTAGGCTAGGAACTC
AAATTGCAAGAATTGAGTGCTGAGAAGAGACAGAAGTATCTAGAAGCAAATATGACACAAAACACTTTGCCAAAGATCAT
TAAGGCTTGGTTTGTAGCACAGCAACTAGAATAT

Alignment

ORF - retro_mluc_626 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 64.36 %
• Parental protein coverage: 69.2 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  FLVFVHFCNVVLYLLILGAFEDDDITHVEGSVDPIRDIEIIHEELQLKDEEMIGPIIDKLEK-VAVRGGD
          FL.....C.....L....AFED..I.HVE.SV.PI.D.EIIHEELQLK...MIGPII.KLEK.V.V.G.D
Retrocopy FLSHISACDGIINLT--HAFEDEAIMHVERSVGPIQDTEIIHEELQLKGD*MIGPIINKLEK<VVVKG*D

Parental  KKLKPEYDIMCKVKSWVIDQKKPVRFYHDWNDKEIEVLNKYLFLTSKPMVYLVNLSEKDYIRKKNKWLIK
          .KL.PEYDIMCKVKSWVID.KKP...Y.DWNDK.IEV..K.LFLTSK.MVY.VNL...............
Retrocopy *KL*PEYDIMCKVKSWVIDKKKPIPLYPDWNDKKIEVQKKHLFLTSKEMVYFVNLYXXXXXXXXXXXXXX

Parental  IKEWVDKSDPGALVIPFSGAL-ELKLQELSAEERQQYLEANTTQSALPKIIKAGFAALQLEY
          ..E.VDK.DPGA.VIPFSG.L.ELKLQELSAE.RQ.YLEAN.TQ..LPKIIKA.F.A.QLEY
Retrocopy XXECVDKYDPGAFVIPFSGRL>ELKLQELSAEKRQKYLEANMTQNTLPKIIKAWFVAQQLEY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_626 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 17 parental genes, and 27 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000006970	1 retrocopy	retro_btau_1737,
Choloepus hoffmanni	ENSCHOG00000005044	1 retrocopy	retro_chof_1295,
Callithrix jacchus	ENSCJAG00000007877	1 retrocopy	retro_cjac_2875,
Dipodomys ordii	ENSDORG00000008681	1 retrocopy	retro_dord_556,
Homo sapiens	ENSG00000138430	1 retrocopy	retro_hsap_2593,
Gorilla gorilla	ENSGGOG00000022215	1 retrocopy	retro_ggor_1623,
Myotis lucifugus	ENSMLUG00000025196	1 retrocopy	retro_mluc_626 ,
Monodelphis domestica	ENSMODG00000009296	1 retrocopy	retro_mdom_1428,
Nomascus leucogenys	ENSNLEG00000005817	1 retrocopy	retro_nleu_1526,
Otolemur garnettii	ENSOGAG00000016557	1 retrocopy	retro_ogar_1697,
Pongo abelii	ENSPPYG00000012943	2 retrocopies	retro_pabe_1912, retro_pabe_928,
Pan troglodytes	ENSPTRG00000012650	1 retrocopy	retro_ptro_1517,
Rattus norvegicus	ENSRNOG00000019047	1 retrocopy	retro_rnor_2219,
Sorex araneus	ENSSARG00000010743	1 retrocopy	retro_sara_545,
Tupaia belangeri	ENSTBEG00000007574	8 retrocopies	retro_tbel_1749, retro_tbel_2506, retro_tbel_3217, retro_tbel_3581, retro_tbel_418, retro_tbel_4356, retro_tbel_4475, retro_tbel_88,
Tarsius syrichta	ENSTSYG00000005517	2 retrocopies	retro_tsyr_1845, retro_tsyr_394,
Vicugna pacos	ENSVPAG00000009660	2 retrocopies	retro_vpac_52, retro_vpac_613,