RetrogeneDB ID: | retro_mmul_1269 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 16:61051230..61051698(-) | ||
Located in intron of: | ENSMMUG00000005637 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CLIC1 | ||
Ensembl ID: | ENSMMUG00000029827 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 87.18 % |
Parental protein coverage: | 77.23 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | GVTFNVTTVDTKRRTETVQKLCPGGQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNPESNTAG |
GVTF.VT..DTKR.TE.VQKL.P.GQLPFLLYG.E.H.DTNK.EEFL.AVLCPPRYPKL.ALNPESNTA. | |
Retrocopy | GVTFSVTVIDTKRQTEIVQKLYPEGQLPFLLYGMEEHKDTNKTEEFL*AVLCPPRYPKLSALNPESNTAE |
Parental | LDIFAKFSAYIKNSNPALNDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGVSQRKFLDGNELTLAD |
LD.FA.FSAYIKNSNPALND.LEKGLLKALKVLDNYLTSP.PEEVDETSAEDEG.SQRKFLD.NELTLAD | |
Retrocopy | LDVFARFSAYIKNSNPALNDSLEKGLLKALKVLDNYLTSPHPEEVDETSAEDEGISQRKFLDSNELTLAD |
Parental | CNLLPKLHIVQVVCKK |
CNLLPKLHIVQVVCKK | |
Retrocopy | CNLLPKLHIVQVVCKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 4 .03 RPM |
SRP007412_brain_prefrontal_cortex | 0 .08 RPM | 5 .79 RPM |
SRP007412_cerebellum | 0 .06 RPM | 3 .55 RPM |
SRP007412_heart | 0 .00 RPM | 23 .20 RPM |
SRP007412_kidney | 0 .00 RPM | 51 .88 RPM |
SRP007412_liver | 0 .08 RPM | 25 .06 RPM |
SRP007412_testis | 0 .15 RPM | 3 .96 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1238 |
Gorilla gorilla | retro_ggor_2153 |
Pongo abelii | retro_pabe_1514 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000000621 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000002788 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000016424 | 3 retrocopies | |
Felis catus | ENSFCAG00000019049 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000011331 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000015201 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000002416 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000029827 | 3 retrocopies |
retro_mmul_1269 , retro_mmul_290, retro_mmul_902,
|
Monodelphis domestica | ENSMODG00000015240 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000006264 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000022545 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000031840 | 4 retrocopies | |
Procavia capensis | ENSPCAG00000013268 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000016456 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000017982 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000006493 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000001540 | 2 retrocopies |