RetrogeneDB ID: | retro_ggor_2153 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 5:18056448..18057033(+) | ||
Located in intron of: | ENSGGOG00000015686 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CLIC1 | ||
Ensembl ID: | ENSGGOG00000011331 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 87.76 % |
Parental protein coverage: | 81.33 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MAEEQPQVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGGQLPFLLHG |
.AEEQ.QVELFVKAGSDGAKIGNCPF..RLFMVLWLKGVTFNVT..DTKR.T..VQKLCPGGQLPFLL.G | |
Retrocopy | IAEEQLQVELFVKAGSDGAKIGNCPF*-RLFMVLWLKGVTFNVTIIDTKRQTKIVQKLCPGGQLPFLLYG |
Parental | TEVHTDTNKIEEFLEAVLCPPRYPKLAALNPESNTAGLDIFAKFSAYIKNSNPALNDNLEKGLLKALKVL |
.E.H.DTNKIEEFL.AVLC.PRYPKLAALNPESNTA..DIFAKFSAYIKNSNPALNDNLEKGLLKALKVL | |
Retrocopy | MEEHKDTNKIEEFL*AVLCSPRYPKLAALNPESNTAEQDIFAKFSAYIKNSNPALNDNLEKGLLKALKVL |
Parental | DNYLTSPLPEEVDETSAEDEGVSQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRG |
DN.LTS...EEVDETSAEDEG.SQRKFLDGNELTLADCNLLP.LHIVQVVCKKY.G | |
Retrocopy | DNHLTSCQSEEVDETSAEDEGISQRKFLDGNELTLADCNLLPTLHIVQVVCKKYQG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 8 .68 RPM |
SRP007412_cerebellum | 0 .12 RPM | 5 .91 RPM |
SRP007412_heart | 0 .03 RPM | 20 .17 RPM |
SRP007412_kidney | 0 .00 RPM | 135 .83 RPM |
SRP007412_liver | 0 .03 RPM | 40 .04 RPM |
SRP007412_testis | 0 .00 RPM | 50 .97 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1238 |
Pongo abelii | retro_pabe_1514 |
Macaca mulatta | retro_mmul_1269 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000000621 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000002788 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000016424 | 3 retrocopies | |
Felis catus | ENSFCAG00000019049 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000005586 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000011331 | 1 retrocopy |
retro_ggor_2153 ,
|
Macropus eugenii | ENSMEUG00000015201 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000029827 | 3 retrocopies | |
Monodelphis domestica | ENSMODG00000015240 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000006264 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000022545 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000031840 | 4 retrocopies | |
Procavia capensis | ENSPCAG00000013268 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000016456 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000017982 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000006493 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000001540 | 2 retrocopies |