RetrogeneDB ID: | retro_ogar_982 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873532.1:3791574..3792059(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOGAG00000031383 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CLIC1 | ||
Ensembl ID: | ENSOGAG00000031840 | ||
Aliases: | None | ||
Description: | chloride intracellular channel 1 [Source:HGNC Symbol;Acc:2062] |
Percent Identity: | 92.02 % |
Parental protein coverage: | 67.22 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | NCPFSQRLFMVLWLK-GVTFNVTTVDTKRRTETVQKLCPGGQLPFLLYGTEVHTDTNKIEEFLEAVLCPP |
NCPF.QRLFMVLWLK.GVTFN.TTVDTK..TETVQKLCPG.QLPFLLYGTEVHTDTNKIEEFLEAVLCPP | |
Retrocopy | NCPFFQRLFMVLWLK<GVTFNITTVDTKKKTETVQKLCPGEQLPFLLYGTEVHTDTNKIEEFLEAVLCPP |
Parental | RYPKLAALNPESNTAGLDIFAKFSAYIKNSNPALNDNLEKGLLKALKILDNYLTSPLPEEVDETSAEDEG |
RYPKLAALNPESNTAGLDIFAKFSAYIKNSNPA.NDNLEKGLLKALK.LDNYLTSPLPEEVDE.SAED.G | |
Retrocopy | RYPKLAALNPESNTAGLDIFAKFSAYIKNSNPARNDNLEKGLLKALKVLDNYLTSPLPEEVDEISAEDKG |
Parental | ISQRKFLDGNELTLADCNLLLKL |
ISQR.FLDGNELTLA.CNLL.KL | |
Retrocopy | ISQRTFLDGNELTLAGCNLLPKL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000000621 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000002788 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000016424 | 3 retrocopies | |
Felis catus | ENSFCAG00000019049 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000011331 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000015201 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000029827 | 3 retrocopies | |
Monodelphis domestica | ENSMODG00000015240 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000006264 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000022545 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000014620 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000031840 | 4 retrocopies | |
Procavia capensis | ENSPCAG00000013268 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000016456 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000017982 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000006493 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000001540 | 2 retrocopies |