RetrogeneDB ID: | retro_mmul_1476 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 2:160831026..160831726(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAD23B | ||
Ensembl ID: | ENSMMUG00000014944 | ||
Aliases: | None | ||
Description: | UV excision repair protein RAD23 homolog B [Source:RefSeq peptide;Acc:NP_001248717] |
Percent Identity: | 84.19 % |
Parental protein coverage: | 56.48 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFV |
MQVTLKTLQ.Q.FKIDIDPEETVKALKEKIESEK.K.A.PVAGQKLIYAG.ILNDD.ALKEYKIDEK.FV | |
Retrocopy | MQVTLKTLQPQSFKIDIDPEETVKALKEKIESEKAKEASPVAGQKLIYAGEILNDDAALKEYKIDEKIFV |
Parental | VVMV--TKPKAVSTPAPATTQQSAPASTTAI-TSSTATTVAQAPTPVPALAPTSTPASITPASATASSEP |
VVMV..TKPKAVSTPAPATTQQSAPASTTA..TSSTATTVAQAPTPV.ALA.T.TPA.ITP.S.T.SSEP | |
Retrocopy | VVMVMVTKPKAVSTPAPATTQQSAPASTTAV>TSSTATTVAQAPTPVLALATTFTPAFITPVSVTVSSEP |
Parental | APASATKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMGYEREQV |
APASATKQ.K.AEKPAETPVAT..T.TD.T..DSS.SNLFEDATSALVTGQ.YENMVTEI..MGYE.EQV | |
Retrocopy | APASATKQKKAAEKPAETPVATRLTSTDCTL*DSSWSNLFEDATSALVTGQPYENMVTEITPMGYE*EQV |
Parental | IAALRASFNNPDRAVEYLLMGIPG |
IAA.RASF.N.DRAVE.L.MGIPG | |
Retrocopy | IAAPRASFKNLDRAVECLVMGIPG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .45 RPM | 126 .62 RPM |
SRP007412_brain_prefrontal_cortex | 0 .79 RPM | 106 .78 RPM |
SRP007412_cerebellum | 0 .06 RPM | 119 .66 RPM |
SRP007412_heart | 0 .00 RPM | 88 .09 RPM |
SRP007412_kidney | 0 .00 RPM | 83 .68 RPM |
SRP007412_liver | 0 .00 RPM | 74 .93 RPM |
SRP007412_testis | 0 .00 RPM | 78 .52 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000001926 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000016908 | 2 retrocopies | |
Equus caballus | ENSECAG00000021928 | 1 retrocopy | |
Homo sapiens | ENSG00000119318 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000002511 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000014944 | 2 retrocopies |
retro_mmul_1476 , retro_mmul_1725,
|
Nomascus leucogenys | ENSNLEG00000017319 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000007316 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000014216 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000019477 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000021229 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000011925 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000005436 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000007597 | 1 retrocopy |