Parental gene: | ENSCJAG00000016908 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 1:150678076..150725514(+) |
>ENSCJAG00000016908
ATGCATGTCACCCTGAAGACCCTCCAGCAGCGGACCTTCAAGATAGACATCGACCCCGAGGAGAAGGTGAAAGCACTGAA
AGAGAAGATTGAATCTGAAAAGGGGAAAGATGCCTTTCCGGTAGCAGGTCAAAAATTAATTTATGCAGGCAAAATCCTCA
ATGATGATACTGCTCTCAAAGAATATAAAATTGATGAGAAAAACTTTGTGGTGGTTATGGTGACCAAACCCAAAGCAGTG
TCAACACCAGCACCAGCTACAACTCAGCAGTCAGCTCCCGCCAGCACTACAGCAGTTACTTCCTCCACGGTAACAACTGT
GGCTCAGGCTCCAACCCCTGCCCCTGCTTTGGCGCCCACTTCCACACCATCATCCGTCACTCCAGCATCAGCGACAGCAT
CTCCTGAACCTGCACCTGCTAGTGCAACTAAACAAGAGAAACCTGCAGAAAAGCCAGCAGAGACACCAGTGGCTAGTAGC
CCAACATCAACTGACAGTACATCAGGAGACTCTTCTCGGTCAAACCTTTTTGAAGATGCAACAAGTGCACTTGTGACGGG
TCAGTCTTATGAGAATATGGTCACTGAGATCATGTCAATGGGCTATGAACGAGAGCAAGTAATTGCAGCCCTGAGAGCCA
GTTTCAACAACCCTGACAGAGCAGTGGAGTATCTTTTAATGGGAATCCCTGGAGATAGAGAAAATCAGGCTGTGGTTGAC
CCCCCTCAAGCAGCTAGTACTGGGGCGCCTCAGTCTTCAGCAGTGGCTGCAGCTGCAGCGACTACAACAGCAACGACTAC
AACAACAAGTTCTGGAGGACATCCCCTTGAATTTTTACGGAATCAGCCTCAGTTTCAACAGATGAGACAAATTATTCAAC
AGAATCCTTCCCTGCTCCCAGCGTTACTGCAGCAGATAGGTCGAGAGAATCCTCAATTACTTCAGCAAATTAGCCAACAC
CAGGAGCATTTTATTCAGATGTTAAATGAACCAGTTCAAGAAGCTGGCGGTCAAGGAGGAGGAGGTGGAGGTGGCAGTGG
AGGAATTGCAGAAGCTGGAAGTGGTCATATGAACTATATTCAAGTAACGCCTCAGGAAAAAGAAGCTATAGAAAGGTTAA
AGGCATTAGGATTTCCCGAAGGACTTGTGATCCAAGCATATTTTGCTTGTGAGAAGAATGAAAATTTGGCTGCCAATTTT
CTTCTACAGCAAAACTTTGATGAAGATTGA
ATGCATGTCACCCTGAAGACCCTCCAGCAGCGGACCTTCAAGATAGACATCGACCCCGAGGAGAAGGTGAAAGCACTGAA
AGAGAAGATTGAATCTGAAAAGGGGAAAGATGCCTTTCCGGTAGCAGGTCAAAAATTAATTTATGCAGGCAAAATCCTCA
ATGATGATACTGCTCTCAAAGAATATAAAATTGATGAGAAAAACTTTGTGGTGGTTATGGTGACCAAACCCAAAGCAGTG
TCAACACCAGCACCAGCTACAACTCAGCAGTCAGCTCCCGCCAGCACTACAGCAGTTACTTCCTCCACGGTAACAACTGT
GGCTCAGGCTCCAACCCCTGCCCCTGCTTTGGCGCCCACTTCCACACCATCATCCGTCACTCCAGCATCAGCGACAGCAT
CTCCTGAACCTGCACCTGCTAGTGCAACTAAACAAGAGAAACCTGCAGAAAAGCCAGCAGAGACACCAGTGGCTAGTAGC
CCAACATCAACTGACAGTACATCAGGAGACTCTTCTCGGTCAAACCTTTTTGAAGATGCAACAAGTGCACTTGTGACGGG
TCAGTCTTATGAGAATATGGTCACTGAGATCATGTCAATGGGCTATGAACGAGAGCAAGTAATTGCAGCCCTGAGAGCCA
GTTTCAACAACCCTGACAGAGCAGTGGAGTATCTTTTAATGGGAATCCCTGGAGATAGAGAAAATCAGGCTGTGGTTGAC
CCCCCTCAAGCAGCTAGTACTGGGGCGCCTCAGTCTTCAGCAGTGGCTGCAGCTGCAGCGACTACAACAGCAACGACTAC
AACAACAAGTTCTGGAGGACATCCCCTTGAATTTTTACGGAATCAGCCTCAGTTTCAACAGATGAGACAAATTATTCAAC
AGAATCCTTCCCTGCTCCCAGCGTTACTGCAGCAGATAGGTCGAGAGAATCCTCAATTACTTCAGCAAATTAGCCAACAC
CAGGAGCATTTTATTCAGATGTTAAATGAACCAGTTCAAGAAGCTGGCGGTCAAGGAGGAGGAGGTGGAGGTGGCAGTGG
AGGAATTGCAGAAGCTGGAAGTGGTCATATGAACTATATTCAAGTAACGCCTCAGGAAAAAGAAGCTATAGAAAGGTTAA
AGGCATTAGGATTTCCCGAAGGACTTGTGATCCAAGCATATTTTGCTTGTGAGAAGAATGAAAATTTGGCTGCCAATTTT
CTTCTACAGCAAAACTTTGATGAAGATTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 48 .03 RPM |
| SRP051959_skeletal_muscle | 71 .13 RPM |
| SRP051959_lymph_node | 38 .04 RPM |
| SRP051959_lung | 45 .84 RPM |
| SRP051959_liver | 53 .03 RPM |
| SRP051959_kidney | 53 .54 RPM |
| SRP051959_heart | 51 .67 RPM |
| SRP051959_colon | 43 .80 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000001926 | ortholog_one2many | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000004494 | within_species_paralog | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000001174 | possible_ortholog | 2 retrogenes | |
| Equus caballus | ENSECAG00000021928 | ortholog_one2many | 1 retrogene | |
| Homo sapiens | ENSG00000119318 | ortholog_one2many | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000002511 | ortholog_one2many | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000007533 | possible_ortholog | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000014944 | ortholog_one2many | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000017319 | ortholog_one2many | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000007316 | possible_ortholog | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000014216 | ortholog_one2many | 1 retrogene | |
| Pongo abelii | ENSPPYG00000019477 | ortholog_one2many | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000021229 | ortholog_one2many | 1 retrogene | |
| Sarcophilus harrisii | ENSSHAG00000011925 | ortholog_many2many | 1 retrogene | |
| Sus scrofa | ENSSSCG00000005436 | ortholog_one2many | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000007597 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_3865 | 87.71 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_4184 | 94.38 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000016908 retrocopies