RetrogeneDB ID: | retro_mmul_1640 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 3:145052978..145053492(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.2042 | ||
Ensembl ID: | ENSMMUG00000017596 | ||
Aliases: | WBP1L, C10orf26, C9H10orf26 | ||
Description: | outcome predictor in acute leukemia 1 precursor [Source:RefSeq peptide;Acc:NP_001181516] |
Percent Identity: | 79.66 % |
Parental protein coverage: | 52.25 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | DKEACVGTNNQSYICDTGHCCGQSQCCNYYYELWWFWLVWTIIIILSCCCVCHHRRAKHRLQAQQRQHEI |
DKEAC..TNNQSYICDTGHCCGQSQC.NYY.EL...WLVWTIIIILSCCC..HHR.AKHRLQAQ.RQHEI | |
Retrocopy | DKEACMDTNNQSYICDTGHCCGQSQCYNYY*EL**LWLVWTIIIILSCCCNGHHRQAKHRLQAQHRQHEI |
Parental | NLIAYREAHNYSALPFYFRFLPNYLLPPYEEVVNRPPTPPPPYSAFQL-QQQ-QLLPPQCGPAGGSP-PG |
NLI..REA.N.S.LPFYFRFL.NYL.PPYEEVV..PPTPPP.YSAFQL..QQ.QLLP.QCGPA.GSP.PG | |
Retrocopy | NLIPCREAFNHSVLPFYFRFLLNYLTPPYEEVVSQPPTPPPAYSAFQL<MQQQQLLPAQCGPADGSP<PG |
Parental | VDPTRGSQGAQSSPLSGPSRSSTRPPSIADPEPSDLP |
..PTRGS.G....PLS.PSRS.TRPPSIADPEPSDLP | |
Retrocopy | ANPTRGSKGI---PLSEPSRSITRPPSIADPEPSDLP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 4 .82 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 9 .04 RPM |
SRP007412_cerebellum | 0 .00 RPM | 3 .10 RPM |
SRP007412_heart | 0 .06 RPM | 5 .18 RPM |
SRP007412_kidney | 0 .00 RPM | 11 .97 RPM |
SRP007412_liver | 0 .00 RPM | 8 .95 RPM |
SRP007412_testis | 0 .04 RPM | 3 .66 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3774 |
Pongo abelii | retro_pabe_3084 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000014336 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000007532 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000018079 | 1 retrocopy | |
Homo sapiens | ENSG00000166272 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000017596 | 1 retrocopy |
retro_mmul_1640 ,
|
Pongo abelii | ENSPPYG00000002610 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000005555 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000012618 | 2 retrocopies |