RetrogeneDB ID: retro_ttru_138

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: GeneScaffold_1348:250813..251810(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: WBP1L
• Ensembl ID: ENSTTRG00000012618
• Aliases: None
• Description: WW domain binding protein 1-like [Source:HGNC Symbol;Acc:23510]

Sequence

>retro_ttru_138
GATAAGGAAACCTGCGTGGGTCCCAACAATCAAAGCTACATCTGTGACACAGGACGCTGCTCTGGACGGTCTCAGTGCTG
CAGCTACTACTATGAATTCTGGTGGTTCTGGCTCGTGTGGACCATCATCATCCTCCTGAGCTGCTGCTGCGTGTGCCACC
ACCGCCGAGCCAAGCACCGCCTTCAGGCCCAGCAGCGGCAACATGAAATCCACCTGATCGCCTACCTGGAAGCCCACAAT
TACTCAGCGCTGCCATTTCATTTCAGGTTTTTGCCAAACTATTTACTACCTCCTTATGAGGAAGTGGTGAACCGACCTCC
GACTCCTGCCCCACCATACAGTGCCTTCCAGCTCCAGCAGCAGCTGCCTCACAGTGTGGCCCTACGGGCGGCAGCCCCCG
GGGCGCCGACCCCACCAGGGGCTCCCAGGAGCTCAGAGCAGCCCCTCGCCCGGGCCCAGCAGAAGCAGCACGCAACCCCC
GAGCATCACTGACCCTGAGCCCTCCAACATGCCAGCAGATCCAGCAGCCGCCAAAGCCCCTGGGATGGAGCCCAGCGGCT
CTGTGGCCGGCCTGGGGGAGGTGGACCCTGGGGCCTTCCTGGACAAGGATTCCGAATGTAAGGAGGAGCTGCTGAAAGAA
TACAGCTCCGAGCAGGGCGGCGCCCTCCCTGACAGCAAAGACAAGACGCCCGGCAGACGTCGCCGCTTCACAGGTGACTC
GGGCATCGAGGTGTGTGCGTGTAACCGGGGCCACCATGATGAGGACCTCAAGGAGTTCAGGGCACTCATCAACGATGCTC
TGGACGGGCCCCTGGACTTCTGCGACAGCTGCCACGTGCGGCGCCCTGGCGACGAGAAGGAAGGGCTCCGCCAGCCCTCC
GAGGAGCAGGCCCGGGAGCCCGGGCACCCTCACCTGCCGCGGCTGCCTGCCTGCCTGCTGCTGAACACCATCAACGAGCA
GGACTCCCCAAACTCCCGGAGCAGCAGCTCCCCAAGC

Alignment

ORF - retro_ttru_138 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 90.75 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  DKETCVGTNNQSYICDTGHCCGQSQCCNYYYELWWFWLVWTIIIILSCCCVCHHRRAKHRLQAQQRQHEI
          DKETCVG.NNQSYICDTG.C.G.SQCC.YYYE.WWFWLVWTIII.LSCCCVCHHRRAKHRLQAQQRQHEI
Retrocopy DKETCVGPNNQSYICDTGRCSGRSQCCSYYYEFWWFWLVWTIIILLSCCCVCHHRRAKHRLQAQQRQHEI

Parental  NLIAYREAHNYSALPFYFRFLPNYLLPPYEEVVNRPPTPPPPYSAFQLQQQLP-AQCGPTGGSPPSADPT
          .LIAY.EAHNYSALPF.FRFLPNYLLPPYEEVVNRPPTP.PPYSAFQLQQQLP..QCGPTGGSP..ADPT
Retrocopy HLIAYLEAHNYSALPFHFRFLPNYLLPPYEEVVNRPPTPAPPYSAFQLQQQLP<SQCGPTGGSPRGADPT

Parental  RGSQ-GAQSSPLSGPSRSSTRPPSIADPEPSDVPADPAATKAPGMEPSGSVAGLGEVDPGAFLDKDSECK
          RGSQ.GAQSSP..GPSRSST.PPSI.DPEPS..PADPAA.KAPGMEPSGSVAGLGEVDPGAFLDKDSECK
Retrocopy RGSQ<GAQSSPSPGPSRSSTQPPSITDPEPSNMPADPAAAKAPGMEPSGSVAGLGEVDPGAFLDKDSECK

Parental  EELLKEYSSEQGGALPDSKDKTPGRRRRFTGDSGIEVCVCNRGHHDDDLKEFNALIDDALDGPLDFCDSC
          EELLKEYSSEQGGALPDSKDKTPGRRRRFTGDSGIEVC.CNRGHHD.DLKEF.ALI.DALDGPLDFCDSC
Retrocopy EELLKEYSSEQGGALPDSKDKTPGRRRRFTGDSGIEVCACNRGHHDEDLKEFRALINDALDGPLDFCDSC

Parental  HVRPPGDEEEGLCQPSEEQAREPGHPHLPRLPACLLLNTINEQDSPNSQSSSSPS
          HVR.PGDE.EGL.QPSEEQAREPGHPHLPRLPACLLLNTINEQDSPNS.SSSSPS
Retrocopy HVRRPGDEKEGLRQPSEEQAREPGHPHLPRLPACLLLNTINEQDSPNSRSSSSPS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_138 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_138 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000014336	1 retrocopy	retro_btau_855,
Choloepus hoffmanni	ENSCHOG00000007532	1 retrocopy	retro_chof_1174,
Callithrix jacchus	ENSCJAG00000018079	1 retrocopy	retro_cjac_2235,
Homo sapiens	ENSG00000166272	1 retrocopy	retro_hsap_3774,
Macaca mulatta	ENSMMUG00000017596	1 retrocopy	retro_mmul_1640,
Pongo abelii	ENSPPYG00000002610	1 retrocopy	retro_pabe_3084,
Tupaia belangeri	ENSTBEG00000005555	1 retrocopy	retro_tbel_3660,
Tursiops truncatus	ENSTTRG00000012618	2 retrocopies	retro_ttru_138 , retro_ttru_437,