RetrogeneDB ID: retro_ttru_437

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: GeneScaffold_2283:139268..139795(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: WBP1L
• Ensembl ID: ENSTTRG00000012618
• Aliases: None
• Description: WW domain binding protein 1-like [Source:HGNC Symbol;Acc:23510]

Sequence

>retro_ttru_437
GATAAGGAAACCTGCGTGGGTCCCAACAATCAAAGCTACATCTGTGACGCAGGACACTGCTGTGGACAGTCTCAGTGCTG
CAGCTACTACTCTGAATTCTGGTGGTTCTGGCCCTTGTGGACCATCATCATCCTCCTGAGCTGCTGCTGCGTGTGCCACC
ACCGCCGAGCCAAGCACCGCCGTCAGGTCCGACAGCGGCAACATGAAATCCACCTGATCGCCTACCGGGAAGCCCACAAT
TACTCAGCGCTGCCATTTTATTTCAGGTTTTTGCCAAACTATTTACTACCTCCTTATGAGGAAGTGGTGAACCGACTCCG
ACTCCTGCCCCACCATACAGTGCCTTCCAGCTCCAGCAGCAGCTGCCTGCACAGTGTGGCCCTACAGGCGGCAGCCCCCG
GGGCGCCGACCCCACCAGGGGCTCCCAGGGGGCTCAGAGCAGCCCTTCGCCCGGGCCCAGCAGAAGCAGCACGCGACCCC
CGAGCATCACTGACCCTGAGTCCTCCAACATGCCAGCAGACCCAGCA

Alignment

ORF - retro_ttru_437 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 87.01 %
• Parental protein coverage: 52.85 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  DKETCVGTNNQSYICDTGHCCGQSQCCNYYYELWWFWLVWTIIIILSCCCVCHHRRAKHRLQAQQRQHEI
          DKETCVG.NNQSYICD.GHCCGQSQCC.YY.E.WWFW..WTIII.LSCCCVCHHRRAKHR.Q..QRQHEI
Retrocopy DKETCVGPNNQSYICDAGHCCGQSQCCSYYSEFWWFWPLWTIIILLSCCCVCHHRRAKHRRQVRQRQHEI

Parental  NLIAYREAHNYSALPFYFRFLPNYLLPPYEEVVNR-PPTPPPPYSAFQLQQQLPAQCGPTGGSPPSADPT
          .LIAYREAHNYSALPFYFRFLPNYLLPPYEEVVNR..PTP.PPYSAFQLQQQLPAQCGPTGGSP..ADPT
Retrocopy HLIAYREAHNYSALPFYFRFLPNYLLPPYEEVVNR<TPTPAPPYSAFQLQQQLPAQCGPTGGSPRGADPT

Parental  RGSQGAQSSPLSGPSRSSTRPPSIADPEPSDVPADPA
          RGSQGAQSSP..GPSRSSTRPPSI.DPE.S..PADPA
Retrocopy RGSQGAQSSPSPGPSRSSTRPPSITDPESSNMPADPA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_437 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_437 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 8 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000014336	1 retrocopy	retro_btau_855,
Choloepus hoffmanni	ENSCHOG00000007532	1 retrocopy	retro_chof_1174,
Callithrix jacchus	ENSCJAG00000018079	1 retrocopy	retro_cjac_2235,
Homo sapiens	ENSG00000166272	1 retrocopy	retro_hsap_3774,
Macaca mulatta	ENSMMUG00000017596	1 retrocopy	retro_mmul_1640,
Pongo abelii	ENSPPYG00000002610	1 retrocopy	retro_pabe_3084,
Tupaia belangeri	ENSTBEG00000005555	1 retrocopy	retro_tbel_3660,
Tursiops truncatus	ENSTTRG00000012618	2 retrocopies	retro_ttru_138, retro_ttru_437 ,