>retro_mmul_2024
ATGTCATCTGAAATGTTGCCAGCATTTTGTGAAACTTCTAATGTTGACAAAAAGCAAGGCATAAATGAACATCAAAAAGA
AAGCCAGAAGCCAAGATTAGGTAAAGGGTGTGAACCAGTATCTAAACGACAAATGAAAAAACTAATAAAACAGAAACAAC
GGGAAGAGCAATGGGAACTCCGCAAACAAAAGCGGAAAGAAAAACACTAGAGGAAAAAATTGGAGCGACAATGTCAAATG
GAATCAAACTCAGATGGAAATGACAGAAAACATGTTCGAAGAGATGTTGTTCATAGCACCCTTCACCTCATTATTGACTG
TAGTTTTGATGACTTGATGGTATTAAAGGACATTAAGAAACTTCATAAGCAGATTCAACGATGTTATGCAGAAAACCGAC
GGGCACTGCATCCTGTGCAGTTTTACTTGACAAGCCATGGAGGTCAGCTGAACAACAACATGGATGAAAATGACAAAGGA
TGGGTCAACTGGAAGGATATCCATATCAAACCAGAGCACTATAGTGAACTCATAAAAAAAAGAAGACCTGATTTATCTTA
CATCAGATTCACCTAATATACTGAAGGAATTAGATGAATCAAAGGCTTATGTGATTGGAGGATTAGTAGATCACAACCAT
CACAAGGGACTCACATATAAACAAGCATCAGATTATGGAATCAATCATGCACAGCTCCTGCTTGGAAATTTTGTGAAGAT
GAATAGTCGAAAAGTTTTGGCAGTTAATCATGTGTTTGAGATTATTCTGGAATACCTGGAAACAAGAGACTGGCAAGAAG
CATTTTTTACTATCTTCCCCAATGGAAAGGAGCTGTTCCCACAGACAAAACCTGTGAAAGTGCTTCTTATGACAATCAGT
CTGTCAGGATGGAGGAATGTGGATCGGACAGTGATTCCAGTGAGACGGAAGATAGCAGAAATGAACTAGATTCACCACGT
GAAGAAAAGCAGGATAAGGAAAATCACGCTGAATCTACAGTGAACTCTCTGCCACAC
ORF - retro_mmul_2024 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
92.96 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | MSSEMLPAFIETSNVDKKQGINEHQEESQKPRLGEGCEPISKRQMKKLIKQKQWEEQRELRKQKRKEKRK |
| MSSEMLPAF.ETSNVDKKQGINEHQ.ESQKPRLG.GCEP.SKRQMKKLIKQKQ.EEQ.ELRKQKRKEK.. |
Retrocopy | MSSEMLPAFCETSNVDKKQGINEHQKESQKPRLGKGCEPVSKRQMKKLIKQKQREEQWELRKQKRKEKH* |
|
Parental | RKKLERQCQMESNSDGNDRKRVRRDVVHSTLRLIIDCSFDDLMVLKDIKKLHKQIQRCYAENRRALHPVQ |
| RKKLERQCQMESNSDGNDRK.VRRDVVHSTL.LIIDCSFDDLMVLKDIKKLHKQIQRCYAENRRALHPVQ |
Retrocopy | RKKLERQCQMESNSDGNDRKHVRRDVVHSTLHLIIDCSFDDLMVLKDIKKLHKQIQRCYAENRRALHPVQ |
|
Parental | FYLTSHGGQLKKNMDENDKGWVNWKDIHIKPEHYSEL-IKKEDLIYLTSDSPNILKELDESKAYVIGGLV |
| FYLTSHGGQL..NMDENDKGWVNWKDIHIKPEHYSEL....EDLIYLTSDSPNILKELDESKAYVIGGLV |
Retrocopy | FYLTSHGGQLNNNMDENDKGWVNWKDIHIKPEHYSEL>XXXEDLIYLTSDSPNILKELDESKAYVIGGLV |
|
Parental | DHNHHKGLTYKQASDYGINHAQLPLGNFVKMNSRKVLAVNHVFEIILEYLETRDWQEAFFTI-LPQRKGA |
| DHNHHKGLTYKQASDYGINHAQL.LGNFVKMNSRKVLAVNHVFEIILEYLETRDWQEAFFTI.LPQ.KGA |
Retrocopy | DHNHHKGLTYKQASDYGINHAQLLLGNFVKMNSRKVLAVNHVFEIILEYLETRDWQEAFFTI<LPQWKGA |
|
Parental | VPTDKTCESASYDPQSVRMEECGSDSDSSEEEDSRNELDSPREEKQDKENHTESIGNSLPH |
| VPTDKTCESASYD.QSVRMEECGSDSDSSE.EDSRNELDSPREEKQDKENH.ES..NSLPH |
Retrocopy | VPTDKTCESASYDNQSVRMEECGSDSDSSETEDSRNELDSPREEKQDKENHAESTVNSLPH |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain |
0 .11 RPM |
3 .25 RPM |
SRP007412_brain_prefrontal_cortex |
0 .00 RPM |
1 .98 RPM |
SRP007412_cerebellum |
0 .00 RPM |
1 .36 RPM |
SRP007412_heart |
0 .00 RPM |
1 .12 RPM |
SRP007412_kidney |
0 .00 RPM |
2 .58 RPM |
SRP007412_liver |
0 .00 RPM |
1 .07 RPM |
SRP007412_testis |
0 .08 RPM |
6 .67 RPM |
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_2024 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_2024 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmul_2024 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
4 parental genes, and
7 retrocopies.