RetrogeneDB ID: | retro_mmul_2585 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | X:62892945..62894292(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.1927 | ||
Ensembl ID: | ENSMMUG00000011359 | ||
Aliases: | EIF3E, EIF3S6 | ||
Description: | eukaryotic translation initiation factor 3, subunit E [Source:RefSeq peptide;Acc:NP_001245017] |
Percent Identity: | 82.04 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 2 |
Parental | MAEYDLTTRIAHFLDRHLVFPLLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKNLYSDDIPHAL |
MAEY.LTT.IAHFLDRHLV.PL.EFLSVKEIYNEKE..QGKLDLLS.TNM.DFAMDVYKN.YSDD.P.AL | |
Retrocopy | MAEYNLTTHIAHFLDRHLVLPLFEFLSVKEIYNEKE*IQGKLDLLSNTNMIDFAMDVYKNFYSDDVPQAL |
Parental | REKRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTRDGRMLFDYLADKHGFRQEYLDTLYRYAKFQYE |
RE..TT.VAQLKQLQAETEPI.K.FEDPE.TR.M.STRDGRMLFDYL.DKHGFRQEYLD.LY.YA.F..E | |
Retrocopy | REETTTIVAQLKQLQAETEPIAKLFEDPEITR*MKSTRDGRMLFDYLVDKHGFRQEYLDMLYTYAQFENE |
Parental | CGNYSGAAEYLYFFRVLVPATDRNALSSLWGKLASEILMQNWDAAMEDLTRLKETIDNNSVSSPLQSLQQ |
CG.YSGAAEYL.FF.VLVPATDRNAL.SLWGKLASEILM.N.DAAM.DLT..KE.IDNNSVSSPLQSLQQ | |
Retrocopy | CGSYSGAAEYLCFFSVLVPATDRNALNSLWGKLASEILMWNCDAAMGDLTWSKEKIDNNSVSSPLQSLQQ |
Parental | RTWLIHWSLFVFFNHPKGRDNIIDLFL-YQPQYL-NAIQTMCPHILRYLTTAVITNKDVRKRRQVLKDLV |
.T.LI.WSL.VFFNHP....NIIDLFL.YQP.YL..AIQTMCPH...YLTTAVITNKDV.K.RQV.KDLV | |
Retrocopy | KT*LINWSLLVFFNHPRILHNIIDLFL<YQPWYL>KAIQTMCPHSFCYLTTAVITNKDV*KCRQVQKDLV |
Parental | KVIQQESYTYKDPITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVACLEDFIENARLFIFETFCRIH |
KV.QQESYTYK.P.TEFVECLYVNFDFDGAQKKLRECE.VLVNDFFL..CLEDF.ENA.LFIFETFC.IH | |
Retrocopy | KVTQQESYTYKNPVTEFVECLYVNFDFDGAQKKLRECE*VLVNDFFLATCLEDFTENAHLFIFETFCCIH |
Parental | QCISINMLADKLNMTPEEAERWIVNLIR----NARLDAKIDSKLGHVVMGNNAVSPYQQVIEKTKSLSFR |
Q.ISINMLADKLN.TPEEAER.IVNLIR....NA.L.A.IDSKLGHVV.GNNAVSPYQQVI.KTK.L.FR | |
Retrocopy | QFISINMLADKLNVTPEEAER*IVNLIRKLIRNAILGANIDSKLGHVVLGNNAVSPYQQVIKKTKHLPFR |
Parental | SQMLAMNIEKKLNQNSRSEAPNWATQDSGFY |
SQ.LAMNI.KK.N.NSRSE.PNWATQDSGFY | |
Retrocopy | SQILAMNIKKKFNKNSRSEVPNWATQDSGFY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 52 .66 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 28 .96 RPM |
SRP007412_cerebellum | 0 .00 RPM | 79 .10 RPM |
SRP007412_heart | 0 .00 RPM | 64 .24 RPM |
SRP007412_kidney | 0 .00 RPM | 74 .41 RPM |
SRP007412_liver | 0 .00 RPM | 32 .74 RPM |
SRP007412_testis | 0 .00 RPM | 97 .81 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000006702 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000000702 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000006458 | 3 retrocopies | |
Equus caballus | ENSECAG00000000236 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000013105 | 1 retrocopy | |
Felis catus | ENSFCAG00000003665 | 1 retrocopy | |
Homo sapiens | ENSG00000104408 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000022955 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000007269 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000011359 | 1 retrocopy |
retro_mmul_2585 ,
|
Mustela putorius furo | ENSMPUG00000005924 | 2 retrocopies | |
Mus musculus | ENSMUSG00000022336 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000004120 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000008050 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000020505 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000027690 | 4 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000008976 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000011025 | 2 retrocopies |