RetrogeneDB ID: | retro_ocun_1399 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 8:20053607..20054401(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF3E | ||
Ensembl ID: | ENSOCUG00000008050 | ||
Aliases: | None | ||
Description: | eukaryotic translation initiation factor 3, subunit E [Source:HGNC Symbol;Acc:3277] |
Percent Identity: | 50.18 % |
Parental protein coverage: | 59.09 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 1 |
Parental | TTRQMQSTRDGRMLFDYLADKHGFRQEYLDTLYRYAKFQYECGNYSGAAEYLYFFRVLVPATDRNALSSL |
T.RQ.QST.D..M.FD.LA.K..FR..Y.D.L...AK.QY.CGNY..A.E...F..VL.PA.D.NA..SL | |
Retrocopy | TARQIQSTKDSLMAFDNLANKWSFRHKYSDILHKSAKYQYKCGNYLEAEEFICFC*VLMPAIDKNASCSL |
Parental | WGKLASEILM-QNWDAAMEDLTRLKETIDNNSVSSPLQSLQQRTWLIHWSLFVFFNHPKGRDNIIDLFLY |
WGK..SEIL...N.D....DLT...ETI.N.SVSSP..S........H...F...N.PK...N.I.LFLY | |
Retrocopy | WGKPPSEILL<VN*DSTN*DLTHSRETIGNYSVSSPMSSSMN---FAHSFIFLSSNLPKV-PNFIVLFLY |
Parental | QPQYLNAIQTMCPHILRYLTTAVITNKDVRKRRQVLKDLVKVIQQESYTYKDPITEFVECLYVNFDFDGA |
Q..YLNA.QT.C.H...Y..T.VITN.DV.K..QV.....KVIQQES..Y.D.........Y..F.FDGA | |
Retrocopy | QSKYLNAVQTICLHGPCYSITVVITN*DV*KHWQVPRQ-TKVIQQES--YTDLPNYRIC*VYADFSFDGA |
Parental | -QKKLRECESVLVNDFFLVACLEDFIENARLFIFETFCRIHQCISINMLADKLNMTPEEAERWIV |
..KKL.E....L....F....LEDF..NA.LF.FE......QCISI..LA..LN.TP..AER.IV | |
Retrocopy | LKKKLSESNQCLCMTSFW--WLEDFTGNAYLFLFEALSPNYQCISIKTLAKTLNITPKQAERQIV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 107 .73 RPM |
SRP017611_kidney | 0 .00 RPM | 180 .31 RPM |
SRP017611_liver | 0 .00 RPM | 52 .41 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000006702 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000000702 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000006458 | 3 retrocopies | |
Equus caballus | ENSECAG00000000236 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000013105 | 1 retrocopy | |
Felis catus | ENSFCAG00000003665 | 1 retrocopy | |
Homo sapiens | ENSG00000104408 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000022955 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000007269 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000011359 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000005924 | 2 retrocopies | |
Mus musculus | ENSMUSG00000022336 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000004120 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000008050 | 1 retrocopy |
retro_ocun_1399 ,
|
Pan troglodytes | ENSPTRG00000020505 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000027690 | 4 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000008976 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000011025 | 2 retrocopies |