Parental gene: | EIF3E, ENSCJAG00000006458 |
| Aliases: | None |
| Description: | Eukaryotic translation initiation factor 3 subunit E [Source:UniProtKB/TrEMBL;Acc:F6RU74] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 16:86332861..86385735(+) |
>ENSCJAG00000006458
ATGGCGGAGTACGACTTAACTACTCGCATCGCGCACTTTCTGGATCGGCATCTAGTCTTTCCGCTTCTGGAGTTTCTCTC
TGTAAAGGAGATATATAATGAAAAGGAATTATTACAAGGTAAATTGGACCTTCTTAGTGATACCAACATGGTAGACTTTG
CTATGGATGTTTACAAAAACCTTTATTCTGATGATATTCCTCATGCTTTGAGAGAGAAAAGAACCACAGTTGTTGCACAA
CTGAAACAGCTTCAGGCAGAAACAGAACCAATTGTGAAGATGTTTGAAGATCCAGAAACTACAAGGCAAATGCAGTCAAC
CAGGGATGGTAGGATGCTCTTTGACTACCTGGCGGACAAACATGGTTTTAGGCAGGAATATTTAGACACCCTTTACAGAT
ATGCAAAATTCCAATATGAATGTGGGAATTACTCAGGAGCAGCAGAATATCTTTATTTTTTTAGAGTGTTGGTTCCAGCA
ACAGATAGAAATGCATTAAGTTCACTCTGGGGAAAGCTGGCCTCTGAAATCTTAATGCAAAATTGGGATGCCGCCATGGA
AGATCTTACACGGTTAAAAGAGACCATAGATAATAATTCTGTGAGTTCTCCACTCCAGTCTCTTCAGCAGAGAACATGGC
TTATTCACTGGTCCCTGTTTGTTTTCTTCAATCACCCCAAAGGTCGCGATAATATTATCGATCTCTTCCTTTACCAGCCA
CAGTATCTTAATGCAATTCAGACAATGTGTCCACACATTCTTCGCTATTTGACTACAGCAGTCATAACAAACAAGGATGT
TCGAAAACGCCGGCAAGTGCTGAAAGATCTAGTTAAGGTTATTCAACAGGAGTCTTACACATATAAGGACCCAATTACAG
AATTTGTTGAATGCTTATATGTTAACTTTGACTTTGATGGGGCTCAGAAAAAGCTGAGGGAATGTGAATCAGTGCTTGTG
AATGACTTCTTCTTGGTGGCCTGTCTTGAAGATTTCATTGAAAATGCCCGTCTCTTCATATTTGAAACTTTCTGTCGCAT
CCACCAGTGTATCAGCATTAACATGTTGGCAGATAAACTGAACATGACTCCAGAAGAAGCTGAAAGGTGGATTGTAAATT
TGATTAGAAATGCAAGACTGGATGCCAAGATTGATTCTAAATTGGGTCATGTGGTTATGGGTAACAATGCAGTCTCACCC
TATCAGCAAGTGATTGAAAAAACCAAAAGCCTTTCTTTTAGAAGCCAGATGTTGGCCATGAATATCGAGAAGAAACTTAA
TCAGAATAGCAGGTCAGAGGCTCCTAACTGGGCAACTCAAGATTCTGGATTCTACTGA
ATGGCGGAGTACGACTTAACTACTCGCATCGCGCACTTTCTGGATCGGCATCTAGTCTTTCCGCTTCTGGAGTTTCTCTC
TGTAAAGGAGATATATAATGAAAAGGAATTATTACAAGGTAAATTGGACCTTCTTAGTGATACCAACATGGTAGACTTTG
CTATGGATGTTTACAAAAACCTTTATTCTGATGATATTCCTCATGCTTTGAGAGAGAAAAGAACCACAGTTGTTGCACAA
CTGAAACAGCTTCAGGCAGAAACAGAACCAATTGTGAAGATGTTTGAAGATCCAGAAACTACAAGGCAAATGCAGTCAAC
CAGGGATGGTAGGATGCTCTTTGACTACCTGGCGGACAAACATGGTTTTAGGCAGGAATATTTAGACACCCTTTACAGAT
ATGCAAAATTCCAATATGAATGTGGGAATTACTCAGGAGCAGCAGAATATCTTTATTTTTTTAGAGTGTTGGTTCCAGCA
ACAGATAGAAATGCATTAAGTTCACTCTGGGGAAAGCTGGCCTCTGAAATCTTAATGCAAAATTGGGATGCCGCCATGGA
AGATCTTACACGGTTAAAAGAGACCATAGATAATAATTCTGTGAGTTCTCCACTCCAGTCTCTTCAGCAGAGAACATGGC
TTATTCACTGGTCCCTGTTTGTTTTCTTCAATCACCCCAAAGGTCGCGATAATATTATCGATCTCTTCCTTTACCAGCCA
CAGTATCTTAATGCAATTCAGACAATGTGTCCACACATTCTTCGCTATTTGACTACAGCAGTCATAACAAACAAGGATGT
TCGAAAACGCCGGCAAGTGCTGAAAGATCTAGTTAAGGTTATTCAACAGGAGTCTTACACATATAAGGACCCAATTACAG
AATTTGTTGAATGCTTATATGTTAACTTTGACTTTGATGGGGCTCAGAAAAAGCTGAGGGAATGTGAATCAGTGCTTGTG
AATGACTTCTTCTTGGTGGCCTGTCTTGAAGATTTCATTGAAAATGCCCGTCTCTTCATATTTGAAACTTTCTGTCGCAT
CCACCAGTGTATCAGCATTAACATGTTGGCAGATAAACTGAACATGACTCCAGAAGAAGCTGAAAGGTGGATTGTAAATT
TGATTAGAAATGCAAGACTGGATGCCAAGATTGATTCTAAATTGGGTCATGTGGTTATGGGTAACAATGCAGTCTCACCC
TATCAGCAAGTGATTGAAAAAACCAAAAGCCTTTCTTTTAGAAGCCAGATGTTGGCCATGAATATCGAGAAGAAACTTAA
TCAGAATAGCAGGTCAGAGGCTCCTAACTGGGCAACTCAAGATTCTGGATTCTACTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 138 .68 RPM |
| SRP051959_skeletal_muscle | 134 .76 RPM |
| SRP051959_lymph_node | 137 .12 RPM |
| SRP051959_lung | 97 .67 RPM |
| SRP051959_liver | 111 .94 RPM |
| SRP051959_kidney | 77 .47 RPM |
| SRP051959_heart | 85 .05 RPM |
| SRP051959_colon | 72 .49 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000006702 | ortholog_one2one | 1 retrogene | |
| Canis familiaris | ENSCAFG00000000702 | ortholog_one2one | 1 retrogene | |
| Equus caballus | ENSECAG00000000236 | ortholog_one2one | 1 retrogene | |
| Echinops telfairi | ENSETEG00000013105 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000003665 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000104408 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000022955 | ortholog_one2one | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000007269 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000011359 | ortholog_one2one | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000005924 | ortholog_one2one | 2 retrogenes | |
| Mus musculus | ENSMUSG00000022336 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000004120 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000008050 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000020505 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000027690 | ortholog_one2one | 4 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000008976 | ortholog_one2one | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000011025 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_701 | 84.30 | 64.94 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_2333 | 97.76 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_2686 | 70.48 | 56.82 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000006458 retrocopies