RetrogeneDB ID: | retro_mmur_1070 | ||
Retrocopylocation | Organism: | Mouse Lemur (Microcebus murinus) | |
Coordinates: | scaffold_19051:15578..16124(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | VPS26A | ||
Ensembl ID: | ENSMICG00000014940 | ||
Aliases: | None | ||
Description: | vacuolar protein sorting 26 homolog A (S. pombe) [Source:HGNC Symbol;Acc:12711] |
Percent Identity: | 97.25 % |
Parental protein coverage: | 56.17 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | SFLGGFFGPICEIDIVLNDGETRKMAEMKTEDGKVEKHYLFYDGESVSGKVNLAFKQPGKRLEHQGIRIE |
SFLGGFFGPICEID.VLNDGETR.MAEMKTEDGKVEKHYLFYDGESVSGKVNLAFKQPGKRLEH.GIRIE | |
Retrocopy | SFLGGFFGPICEIDLVLNDGETREMAEMKTEDGKVEKHYLFYDGESVSGKVNLAFKQPGKRLEH*GIRIE |
Parental | FVGQIELFNDKSNTHEFVNLVKELALPGELTQSRSYDFEFMQVEKPYESYIGANVRLRYFLKVTIVRRLT |
FVGQIELFND.SNTHEFVNLVKELALPGELTQSRSYDFEFMQVEKPYES.IGANVRLRYFLKVTIVRRLT | |
Retrocopy | FVGQIELFND*SNTHEFVNLVKELALPGELTQSRSYDFEFMQVEKPYESFIGANVRLRYFLKVTIVRRLT |
Parental | DLVKEYDLIVHQLATYPDVNNSIKMEVGIEDCLHIEFEYNKS |
DLVKEYDLIVHQLATYPDVNNSIKMEVGIEDCLHIEFEYNKS | |
Retrocopy | DLVKEYDLIVHQLATYPDVNNSIKMEVGIEDCLHIEFEYNKS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000013827 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000007324 | 5 retrocopies | |
Callithrix jacchus | ENSCJAG00000012907 | 1 retrocopy | |
Equus caballus | ENSECAG00000009507 | 1 retrocopy | |
Homo sapiens | ENSG00000122958 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000010433 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000014940 | 1 retrocopy |
retro_mmur_1070 ,
|
Mustela putorius furo | ENSMPUG00000004519 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000011548 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000002386 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000002567 | 3 retrocopies | |
Tupaia belangeri | ENSTBEG00000015348 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000000630 | 1 retrocopy |