Parental gene:

VPS26A, ENSCJAG00000012907

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:12:54994087..55043899(-)


>ENSCJAG00000012907
ATGAGTTTTCTTGGAGGCTTTTTTGGTCCAATTTGTGAGATCGATATTGTTCTTAACGATGGGGAAACCAGGAAAATGGC
CGAAATGAAAACTGAAGATGGCAAAGTAGAAAAACACTATCTCTTCTATGATGGAGAATCTGTTTCAGGAAAGGTAAACC
TAGCCTTTAAGCAACCTGGAAAGAGGCTAGAGCACCAAGGAATTAGAATTGAATTTGTAGGTCAAATTGAACTTTTCAAT
GACAAGAGTAATACTCATGAATTTGTAAACCTAGTGAAAGAACTAGCCTTACCTGGAGAACTGACTCAGAGCAGAAGTTA
TGATTTTGAATTCATGCAAGTTGAAAAGCCATATGAATCTTACATCGGTGCCAATGTCCGTTTGAGGTATTTTCTTAAAG
TGACAATAGTGAGAAGACTGACAGATTTGGTAAAAGAATATGATCTTATTGTTCACCAGCTTGCCACCTATCCTGATGTT
AACAACTCTATTAAGATGGAAGTGGGCATTGAAGATTGTCTACATATAGAATTTGAATATAATAAATCAAAGTATCATTT
AAAGGATGTGATCGTTGGAAAAATTTACTTCTTATTAGTAAGAATAAAAATACAACATATGGAGTTACAGCTGATCAAAA
AAGAGATCACAGGAATTGGACCCAGTACCACAACAGAAACAGAAACAATAGCCAAATACGAAATAATGGATGGTGCACCA
GTAAAAGGTGAATCAATTCCAATAAGATTATTTTTAGCAGGATATGACCCAACTCCAACAATGAGAGATGTGAACAAAAA
ATTTTCAGTAAGGTACTTTTTGAATTTAGTGCTTGTTGATGAGGAAGACCGAAGGTACTTCAAACAGCAGGAGATCATTT
TATGGAGAAAAGCTCCTGAAAAACTGAGGAAACAGAGAACAAACTTTCACCAGCGATTTGAATCTCCAGAATCACAGGCA
TCTGCTGAACAGCCTGAAATGTGA

Library Parental gene expression (RPM)
SRP051959_spleen 11 .79 RPM
SRP051959_skeletal_muscle 8 .25 RPM
SRP051959_lymph_node 9 .06 RPM
SRP051959_lung 13 .49 RPM
SRP051959_liver 6 .15 RPM
SRP051959_kidney 12 .96 RPM
SRP051959_heart 11 .70 RPM
SRP051959_colon 11 .25 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000013827 ortholog_one2one 1 retrogene
retro_cfam_1133,
Choloepus hoffmanni ENSCHOG00000007324 ortholog_one2one 5 retrogenes
retro_chof_1303, retro_chof_1663, retro_chof_1796, retro_chof_2352, retro_chof_242,
Equus caballus ENSECAG00000009507 ortholog_one2many 1 retrogene
retro_ecab_17,
Homo sapiens ENSG00000122958 ortholog_one2one 1 retrogene
retro_hsap_2688,
Gorilla gorilla ENSGGOG00000010433 ortholog_one2one 1 retrogene
retro_ggor_1875,
Microcebus murinus ENSMICG00000014940 ortholog_one2one 1 retrogene
retro_mmur_1070,
Mustela putorius furo ENSMPUG00000004519 ortholog_one2many 1 retrogene
retro_mputfur_146,
Nomascus leucogenys ENSNLEG00000011548 ortholog_one2one 1 retrogene
retro_nleu_1187,
Pongo abelii ENSPPYG00000002386 ortholog_one2one 1 retrogene
retro_pabe_2293,
Pan troglodytes ENSPTRG00000002567 ortholog_one2one 3 retrogenes
retro_ptro_1815, retro_ptro_2245, retro_ptro_4,
Tupaia belangeri ENSTBEG00000015348 ortholog_one2one 1 retrogene
retro_tbel_1425,
Vicugna pacos ENSVPAG00000000630 ortholog_one2one 1 retrogene
retro_vpac_385,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1420 83.08 80.43
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Download FASTA sequences of all ENSCJAG00000012907 retrocopies