RetrogeneDB ID: | retro_mmur_1148 | ||
Retrocopylocation | Organism: | Mouse Lemur (Microcebus murinus) | |
Coordinates: | scaffold_25863:1142..1715(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FDPS | ||
Ensembl ID: | ENSMICG00000007468 | ||
Aliases: | None | ||
Description: | farnesyl diphosphate synthase [Source:HGNC Symbol;Acc:3631] |
Percent Identity: | 97.38 % |
Parental protein coverage: | 62.42 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | SSYQTEIGQTLDLITAPQGNVELGRFTEKRYKSIVKYKTAFYSFYLPVAAAMYMAGIDGEKEHANAKKIL |
SSYQTEIGQTLDLITAPQGNVELGRFTEKRYKSIVKYKTAFYSFYLPVAAAMYMAGIDGEKEHANAKKIL | |
Retrocopy | SSYQTEIGQTLDLITAPQGNVELGRFTEKRYKSIVKYKTAFYSFYLPVAAAMYMAGIDGEKEHANAKKIL |
Parental | LEMGEFFQIQDDYLDLFGDPSVTGKVGTDIQDNKCSWLVVQCLQRATPEQRQXXXENYGQKEAEKVARVK |
LEMGEFFQIQDDYLDLFGDPSVTGKVGTDIQDNKCSWLVVQCLQRATPEQRQ...ENYGQKEAEKVARVK | |
Retrocopy | LEMGEFFQIQDDYLDLFGDPSVTGKVGTDIQDNKCSWLVVQCLQRATPEQRQILQENYGQKEAEKVARVK |
Parental | ALYEELDLQAVFLQYEEDSYSHLMSLIEQYAAPLPRAIFLELARKIYKRKK |
ALYEELDLQAVFLQYEEDSYS.LMSLIEQYAAPLPRAIFLELARKIYK.KK | |
Retrocopy | ALYEELDLQAVFLQYEEDSYSYLMSLIEQYAAPLPRAIFLELARKIYKWKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000008364 | 11 retrocopies | |
Echinops telfairi | ENSETEG00000001154 | 6 retrocopies | |
Homo sapiens | ENSG00000160752 | 6 retrocopies | |
Microcebus murinus | ENSMICG00000007468 | 1 retrocopy |
retro_mmur_1148 ,
|
Macaca mulatta | ENSMMUG00000023144 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000012099 | 6 retrocopies | |
Pongo abelii | ENSPPYG00000000747 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000001422 | 9 retrocopies | |
Rattus norvegicus | ENSRNOG00000043377 | 3 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000004475 | 1 retrocopy |