Parental gene: | FDPS, ENSPTRG00000001422 |
| Aliases: | None |
| Description: | None |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 1:133560990..133572926(+) |
>ENSPTRG00000001422
ATGCCCCTGTCCCGCTGGTTGAGATCTGTGGGGGTCTTCCTGCTGCCAGCCCCCTACTGGGCACCCCGGGAGAGGTGGCT
GGGTTCCCTACGGCGGCCCTCCCTGGTGCACGGGTACCCAGTCCTGGCCTGGCACAGTGCCCGCTGCTGGTGCCAAGCGT
GGACAGAGGAACCTCGAGCCCTTTGCTCCTCCCTCAGAATGAACGGAGACCAGAATTCAGATGTTTATGCCCAAGAAAAG
CAGGATTTCGTTCAGCACTTCTCCCAGATCGTTAGGGTGCTGACTGAGGATGAGATGGGGCACCCAGAGATAGGAGATGC
TATTGCCCGGCTCAAGGAGGTCCTGGAGTACAATGCCATTGGAGGCAAGTATAACCGGGGTTTGACGGTGGTAGTAGCAT
TCCGGGAGCTGGTGGAGCCAAGGAAACAGGATGCTGATAGTCTCCAGCGGGCCTGGACTGTGGGCTGGTGTGTGGAACTG
CTGCAAGCTTTCTTCCTGGTGGCAGATGACATCATGGATTCATCCCTTACCCGCCGGGGACAGATCTGCTGGTATCAGAA
GCCAGGCGTGGGTTTGGATGCCATCAATGATGCTAACCTCCTGGAAGCATGTATCTACCGCCTGCTGAAGCTCTATTGCC
GGGAGCAGCCCTATTACCTGAACCTGATCGAGCTCTTCCTGCAGAGTTCCTATCAGACTGAGATTGGGCAGACCCTGGAC
CTCCTCACAGCCCCCCAGGGCAATGTGGATCTTGTCAGATTCACTGAAAAGAGGTACAAATCTATTGTCAAGTACAAGAC
AGCTTTCTACTCCTTCTACCTTCCTATAGCTGCAGCCATGTACATGGCAGGAATTGATGGCGAGAAGGAGCACGCCAATG
CCAAGAAGATCCTGCTGGAGATGGGGGAGTTCTTTCAGATTCAGGATGATTACCTTGACCTCTTTGGGGACCCCAGTGTG
ACCGGCAAAATTGGCACTGACATCCAGGACAACAAATGCAGCTGGCTGGTGGTTCAGTGTCTGCAACGGGCCACTCCAGA
ACAGTACCAGATCCTGAAGGAAAATTATGGGCAGAAGGAGGCTGAGAAAGTGGCCCGGGTGAAGGCGCTATATGAGGAGC
TGGATCTGCCGGCAGTGTTCTTGCAATATGAGGAAGACAGTTACAGCCACATTATGGCTCTCATTGAACAGTACGCAGCA
CCCCTGCCCCCAGCCGTCTTTCTGGGGCTTGCGCGCAAAATCTACAAGCGGAGAAAGTGA
ATGCCCCTGTCCCGCTGGTTGAGATCTGTGGGGGTCTTCCTGCTGCCAGCCCCCTACTGGGCACCCCGGGAGAGGTGGCT
GGGTTCCCTACGGCGGCCCTCCCTGGTGCACGGGTACCCAGTCCTGGCCTGGCACAGTGCCCGCTGCTGGTGCCAAGCGT
GGACAGAGGAACCTCGAGCCCTTTGCTCCTCCCTCAGAATGAACGGAGACCAGAATTCAGATGTTTATGCCCAAGAAAAG
CAGGATTTCGTTCAGCACTTCTCCCAGATCGTTAGGGTGCTGACTGAGGATGAGATGGGGCACCCAGAGATAGGAGATGC
TATTGCCCGGCTCAAGGAGGTCCTGGAGTACAATGCCATTGGAGGCAAGTATAACCGGGGTTTGACGGTGGTAGTAGCAT
TCCGGGAGCTGGTGGAGCCAAGGAAACAGGATGCTGATAGTCTCCAGCGGGCCTGGACTGTGGGCTGGTGTGTGGAACTG
CTGCAAGCTTTCTTCCTGGTGGCAGATGACATCATGGATTCATCCCTTACCCGCCGGGGACAGATCTGCTGGTATCAGAA
GCCAGGCGTGGGTTTGGATGCCATCAATGATGCTAACCTCCTGGAAGCATGTATCTACCGCCTGCTGAAGCTCTATTGCC
GGGAGCAGCCCTATTACCTGAACCTGATCGAGCTCTTCCTGCAGAGTTCCTATCAGACTGAGATTGGGCAGACCCTGGAC
CTCCTCACAGCCCCCCAGGGCAATGTGGATCTTGTCAGATTCACTGAAAAGAGGTACAAATCTATTGTCAAGTACAAGAC
AGCTTTCTACTCCTTCTACCTTCCTATAGCTGCAGCCATGTACATGGCAGGAATTGATGGCGAGAAGGAGCACGCCAATG
CCAAGAAGATCCTGCTGGAGATGGGGGAGTTCTTTCAGATTCAGGATGATTACCTTGACCTCTTTGGGGACCCCAGTGTG
ACCGGCAAAATTGGCACTGACATCCAGGACAACAAATGCAGCTGGCTGGTGGTTCAGTGTCTGCAACGGGCCACTCCAGA
ACAGTACCAGATCCTGAAGGAAAATTATGGGCAGAAGGAGGCTGAGAAAGTGGCCCGGGTGAAGGCGCTATATGAGGAGC
TGGATCTGCCGGCAGTGTTCTTGCAATATGAGGAAGACAGTTACAGCCACATTATGGCTCTCATTGAACAGTACGCAGCA
CCCCTGCCCCCAGCCGTCTTTCTGGGGCTTGCGCGCAAAATCTACAAGCGGAGAAAGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 63 .97 RPM |
| SRP007412_cerebellum | 58 .00 RPM |
| SRP007412_heart | 30 .14 RPM |
| SRP007412_kidney | 85 .10 RPM |
| SRP007412_liver | 177 .75 RPM |
| SRP007412_testis | 36 .67 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000008364 | ortholog_one2many | 11 retrogenes | |
| Echinops telfairi | ENSETEG00000001154 | ortholog_one2one | 6 retrogenes | |
| Homo sapiens | ENSG00000160752 | ortholog_one2one | 6 retrogenes | |
| Microcebus murinus | ENSMICG00000007468 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000023144 | ortholog_one2one | 3 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000012099 | ortholog_one2one | 6 retrogenes | |
| Pongo abelii | ENSPPYG00000000747 | ortholog_one2one | 3 retrogenes | |
| Rattus norvegicus | ENSRNOG00000043377 | possible_ortholog | 3 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000004475 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_377 | 79.61 | 86.16 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_1028 | 82.87 | 67.78 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ptro_1048 | 79.08 | 85.92 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ptro_1049 | 82.88 | 52.03 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_ptro_2637 | 83.14 | 83.29 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_ptro_2638 | 82.95 | 84.01 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_ptro_2639 | 82.95 | 84.01 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_ptro_2940 | 83.00 | 84.01 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_ptro_2995 | 82.95 | 84.01 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000001422 retrocopies