Parental gene: | FDPS, ENSG00000160752 |
| Aliases: | FDPS, FPPS, FPS |
| Description: | farnesyl diphosphate synthase [Source:HGNC Symbol;Acc:3631] |
| Organism: | Human (Homo sapiens) |
| Coordinates: | 1:155278538..155290457(+) |
>ENSG00000160752
ATGCCCCTGTCCCGCTGGTTGAGATCTGTGGGGGTCTTCCTGCTGCCAGCCCCCTACTGGGCACCCCGGGAGAGGTGGCT
GGGTTCCCTACGGCGGCCCTCCCTGGTGCACGGGTACCCAGTCCTGGCCTGGCACAGTGCCCGCTGCTGGTGCCAAGCGT
GGACAGAGGAACCTCGAGCCCTTTGCTCCTCCCTCAGAATGAACGGAGACCAGAATTCAGATGTTTATGCCCAAGAAAAG
CAGGATTTCGTTCAGCACTTCTCCCAGATCGTTAGGGTGCTGACTGAGGATGAGATGGGGCACCCAGAGATAGGAGATGC
TATTGCCCGGCTCAAGGAGGTCCTGGAGTACAATGCCATTGGAGGCAAGTATAACCGGGGTTTGACGGTGGTAGTAGCAT
TCCGGGAGCTGGTGGAGCCAAGGAAACAGGATGCTGATAGTCTCCAGCGGGCCTGGACTGTGGGCTGGTGTGTGGAACTG
CTGCAAGCTTTCTTCCTGGTGGCAGATGACATCATGGATTCATCCCTTACCCGCCGGGGACAGATCTGCTGGTATCAGAA
GCCGGGCGTGGGTTTGGATGCCATCAATGATGCTAACCTCCTGGAAGCATGTATCTACCGCCTGCTGAAGCTCTATTGCC
GGGAGCAGCCCTATTACCTGAACCTGATCGAGCTCTTCCTGCAGAGTTCCTATCAGACTGAGATTGGGCAGACCCTGGAC
CTCCTCACAGCCCCCCAGGGCAATGTGGATCTTGTCAGATTCACTGAAAAGAGGTACAAATCTATTGTCAAGTACAAGAC
AGCTTTCTACTCCTTCTACCTTCCTATAGCTGCAGCCATGTACATGGCAGGAATTGATGGCGAGAAGGAGCACGCCAATG
CCAAGAAGATCCTGCTGGAGATGGGGGAGTTCTTTCAGATTCAGGATGATTACCTTGACCTCTTTGGGGACCCCAGTGTG
ACCGGCAAAATTGGCACTGACATCCAGGACAACAAATGCAGCTGGCTGGTGGTTCAGTGTCTGCAACGGGCCACTCCAGA
ACAGTACCAGATCCTGAAGGAAAATTACGGGCAGAAGGAGGCTGAGAAAGTGGCCCGGGTGAAGGCGCTATATGAGGAGC
TGGATCTGCCAGCAGTGTTCTTGCAATATGAGGAAGACAGTTACAGCCACATTATGGCTCTCATTGAACAGTACGCAGCA
CCCCTGCCCCCAGCCGTCTTTCTGGGGCTTGCGCGCAAAATCTACAAGCGGAGAAAGTGA
ATGCCCCTGTCCCGCTGGTTGAGATCTGTGGGGGTCTTCCTGCTGCCAGCCCCCTACTGGGCACCCCGGGAGAGGTGGCT
GGGTTCCCTACGGCGGCCCTCCCTGGTGCACGGGTACCCAGTCCTGGCCTGGCACAGTGCCCGCTGCTGGTGCCAAGCGT
GGACAGAGGAACCTCGAGCCCTTTGCTCCTCCCTCAGAATGAACGGAGACCAGAATTCAGATGTTTATGCCCAAGAAAAG
CAGGATTTCGTTCAGCACTTCTCCCAGATCGTTAGGGTGCTGACTGAGGATGAGATGGGGCACCCAGAGATAGGAGATGC
TATTGCCCGGCTCAAGGAGGTCCTGGAGTACAATGCCATTGGAGGCAAGTATAACCGGGGTTTGACGGTGGTAGTAGCAT
TCCGGGAGCTGGTGGAGCCAAGGAAACAGGATGCTGATAGTCTCCAGCGGGCCTGGACTGTGGGCTGGTGTGTGGAACTG
CTGCAAGCTTTCTTCCTGGTGGCAGATGACATCATGGATTCATCCCTTACCCGCCGGGGACAGATCTGCTGGTATCAGAA
GCCGGGCGTGGGTTTGGATGCCATCAATGATGCTAACCTCCTGGAAGCATGTATCTACCGCCTGCTGAAGCTCTATTGCC
GGGAGCAGCCCTATTACCTGAACCTGATCGAGCTCTTCCTGCAGAGTTCCTATCAGACTGAGATTGGGCAGACCCTGGAC
CTCCTCACAGCCCCCCAGGGCAATGTGGATCTTGTCAGATTCACTGAAAAGAGGTACAAATCTATTGTCAAGTACAAGAC
AGCTTTCTACTCCTTCTACCTTCCTATAGCTGCAGCCATGTACATGGCAGGAATTGATGGCGAGAAGGAGCACGCCAATG
CCAAGAAGATCCTGCTGGAGATGGGGGAGTTCTTTCAGATTCAGGATGATTACCTTGACCTCTTTGGGGACCCCAGTGTG
ACCGGCAAAATTGGCACTGACATCCAGGACAACAAATGCAGCTGGCTGGTGGTTCAGTGTCTGCAACGGGCCACTCCAGA
ACAGTACCAGATCCTGAAGGAAAATTACGGGCAGAAGGAGGCTGAGAAAGTGGCCCGGGTGAAGGCGCTATATGAGGAGC
TGGATCTGCCAGCAGTGTTCTTGCAATATGAGGAAGACAGTTACAGCCACATTATGGCTCTCATTGAACAGTACGCAGCA
CCCCTGCCCCCAGCCGTCTTTCTGGGGCTTGCGCGCAAAATCTACAAGCGGAGAAAGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| bodymap2_liver | 40 .22 RPM |
| bodymap2_lung | 35 .23 RPM |
| bodymap2_breast | 36 .40 RPM |
| bodymap2_adipose | 36 .87 RPM |
| bodymap2_adrenal | 72 .97 RPM |
| bodymap2_skeletal_muscle | 9 .69 RPM |
| bodymap2_thyroid | 32 .62 RPM |
| bodymap2_prostate | 23 .66 RPM |
| bodymap2_colon | 29 .89 RPM |
| bodymap2_testis | 35 .37 RPM |
| bodymap2_brain | 44 .33 RPM |
| bodymap2_heart | 13 .88 RPM |
| bodymap2_white_blood_cells | 22 .92 RPM |
| bodymap2_lymph_node | 35 .56 RPM |
| bodymap2_ovary | 40 .19 RPM |
| bodymap2_kidney | 46 .26 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000008364 | ortholog_one2many | 11 retrogenes | |
| Echinops telfairi | ENSETEG00000001154 | ortholog_one2one | 6 retrogenes | |
| Microcebus murinus | ENSMICG00000007468 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000023144 | ortholog_one2one | 3 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000012099 | ortholog_one2one | 6 retrogenes | |
| Pongo abelii | ENSPPYG00000000747 | ortholog_one2one | 3 retrogenes | |
| Pan troglodytes | ENSPTRG00000001422 | ortholog_one2one | 9 retrogenes | |
| Rattus norvegicus | ENSRNOG00000043377 | possible_ortholog | 3 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000004475 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_hsap_502 | 79.67 | 86.16 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_hsap_1519 | 83.79 | 86.16 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_hsap_1558 | 79.51 | 85.92 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_hsap_1560 | 83.41 | 52.03 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_hsap_3871 | 82.67 | 84.01 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_hsap_3872 | 83.24 | 99.72 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSG00000160752 retrocopies