RetrogeneDB ID: retro_mmur_1453

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_62328:4912..5477(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMICG00000016695
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: RAB31
• Ensembl ID: ENSMICG00000002882
• Aliases: None
• Description: RAB31, member RAS oncogene family [Source:HGNC Symbol;Acc:9771]

Sequence

>retro_mmur_1453
CTGAGGGAACTCAAAGTGTGTCTGTTTGGGGATAGAGTGTAGGAAAATCAAGTATTGTATGGCGGTTTGTGGAAGACAGT
TTTGATCCAAACATCAACCCAACAATAGGGGCATCTTTTATGACCAAGACTGTCCAGTACCAAAATGAGCTACATAAATT
CCTAATCTGGGATACAGCTGGACAAGAACGATTTCGTGCCTTAGCACCAATGTACTATCGAGGGTCGGCTGCAGCTATAA
TCGTTTATATCACAAAAGAGACATTTTCAACATTAAAGAATTGGGTAAAAGCTTCGACAGCATGGCCCACCTAATATTGT
AGTTGCTATTGCTGGAAATAAGTGCGACCTTATCGATGTAAGAGAAGTCATGGAGAGAGATGCTAAGGACTACGCTGACT
CCATTCATTCAATTTTTGTAGAGACCAGCGCAAAAAACGCGATAAACAAATGAACTCTTTATAGAAATTAGTCGAAGAAT
TCCATCCACTGACGCCAACCCGCCATCTGGCGGTAAGGGCTTCAAACTCCGAAGACAGCCTTCAGAGCCAAAGCGAAGCT
GCTGT

Alignment

ORF - retro_mmur_1453 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 61.42 %
• Parental protein coverage: 98.97 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 5

Retrocopy - Parental Gene Alignment:

Parental  IRELKVCLLGDT-GVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLA
          .RELKVCL.GD...VGKSSIV.RFV.D.FD.NI.PTIGASFMTKTV...NELHKFLIWDTAGQERF..LA
Retrocopy LRELKVCLFGDR<SVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQERFRALA

Parental  PMYYRGSAAAVIVYDIT-KQDSFHTLKKWVK-ELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAES
          PMYYRGSAAA.I...IT.K.D.F...K...K..L..HGP.NIV.AIAGNKCDL.D.REV...DAK.YA.S
Retrocopy PMYYRGSAAA-IIVYIT<KRDIFN-IKELGK<KLRQHGPPNIVVAIAGNKCDLIDVREVMERDAKDYADS

Parental  IGAIVVETSAKNAINIEELFQGISR-QIPPLDPLEN-GNSGTIKLGKPGTQASRRCC
          I..I.VETSAKNAIN...L....S.....PL.P..........KL........R.CC
Retrocopy IHSIFVETSAKNAINK*TLYRN*SK<EFHPLTPTRH<SGGKGFKLRRQPSEPKRSCC

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1453 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1453 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000004529	2 retrocopies	retro_cjac_1178, retro_cjac_1179,
Microcebus murinus	ENSMICG00000002882	1 retrocopy	retro_mmur_1453 ,
Microcebus murinus	ENSMICG00000008382	1 retrocopy	retro_mmur_1546,
Microcebus murinus	ENSMICG00000009168	1 retrocopy	retro_mmur_176,
Macaca mulatta	ENSMMUG00000005692	1 retrocopy	retro_mmul_1557,
Monodelphis domestica	ENSMODG00000021443	3 retrocopies	retro_mdom_1491, retro_mdom_1766, retro_mdom_994,
Pteropus vampyrus	ENSPVAG00000016514	1 retrocopy	retro_pvam_874,