Parental gene:

RAB31, ENSCJAG00000004529

Aliases:None
Description:RAB31, member RAS oncogene family [Source:HGNC Symbol;Acc:9771]
Organism:Marmoset (Callithrix jacchus)
Coordinates:13:47334350..47509902(-)


>ENSCJAG00000004529
ATGATGGCAATACGGGAGCTCAAAGTGTGCCTTCTGGGGGACACTGGGGTTGGGAAATCAAGCATTGTGTGTCGATTTGT
CCAGGATCACTTTGACCACAACATCAGCCCTACTATTGGGGCATCTTTTATGACCAAAACTGTACCTTGTGGAAATGAAC
TTCACAAGTTCCTCATCTGGGACACTGCTGGTCAGGAACGGTTTCATTCGTTGGCTCCCATGTACTATCGAGGCTCGGCT
GCTGCTGTTATTGTGTATGATATTACGAAGCAGGATTCATTTTATACCTTGAAGAAATGGGTCAAGGAGCTGAAAGAACA
TGGTCCGGAAAACATCGTAATGGCCATCGCCGGAAACAAGTGCGACCTCTCGGATATTAGGGAGGTTCCCCTGAAGGATG
CTAAGGAATATGCTGAATCCATAGGTGCCATCGTGGTTGAGACAAGTGCAAAAAATGCTATTAATATTGAAGAGCTCTTT
CAAGGAATCAGCCGCCAGATCCCACCCTTGGACCACCATGAAAATGGAAACAATGGAGCAATCAAACTTGTGAAGCAAAC
TACGCAAGCCAGCCGCCGGTGCTGTTGA

Library Parental gene expression (RPM)
SRP051959_spleen 64 .77 RPM
SRP051959_skeletal_muscle 7 .29 RPM
SRP051959_lymph_node 19 .25 RPM
SRP051959_lung 68 .62 RPM
SRP051959_liver 41 .63 RPM
SRP051959_kidney 33 .30 RPM
SRP051959_heart 43 .43 RPM
SRP051959_colon 25 .12 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000000472 within_species_paralog 2 retrogenes
retro_cjac_189, retro_cjac_1948,
Callithrix jacchus ENSCJAG00000003731 within_species_paralog 1 retrogene
retro_cjac_3268,
Callithrix jacchus ENSCJAG00000007527 within_species_paralog 2 retrogenes
retro_cjac_1215, retro_cjac_1879,
Callithrix jacchus ENSCJAG00000019039 within_species_paralog 2 retrogenes
retro_cjac_1715, retro_cjac_842,
Microcebus murinus ENSMICG00000002882 ortholog_one2one 1 retrogene
retro_mmur_1453,
Macaca mulatta ENSMMUG00000005692 ortholog_one2one 1 retrogene
retro_mmul_1557,
Monodelphis domestica ENSMODG00000021443 ortholog_one2one 3 retrogenes
retro_mdom_1491, retro_mdom_1766, retro_mdom_994,
Pteropus vampyrus ENSPVAG00000016514 ortholog_one2one 1 retrogene
retro_pvam_874,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1178 72.65 57.95
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2. retro_cjac_1179 66.67 79.49
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Download FASTA sequences of all ENSCJAG00000004529 retrocopies