RetrogeneDB ID: | retro_mmus_2941 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 7:63826977..63827241(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | 1110059E24Rik | ||
Ensembl ID: | ENSMUSG00000035171 | ||
Aliases: | None | ||
Description: | RIKEN cDNA 1110059E24 gene [Source:MGI Symbol;Acc:MGI:1913456] |
Percent Identity: | 70.79 % |
Parental protein coverage: | 57.42 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MSSQKGNVTRSRPQKHQNTFTFKNDKFDKSVQTKKINAKLHDGVCQRCKEVLEWRVKYSKYKPLSKPKKC |
MSSQKGNV..S..Q.HQ..FTFK.DKF.K.VQ.KKINAKLHDGVCQ..KEVLEW..K..KYK.LSKP.K. | |
Retrocopy | MSSQKGNVI*STSQEHQDMFTFKTDKFNKRVQSKKINAKLHDGVCQSYKEVLEWCIKHGKYKSLSKP*KY |
Parental | VKCLQKTVKDSYHIMCRPC |
.KCLQKT..D..H.MCRPC | |
Retrocopy | IKCLQKTMRDFGH-MCRPC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 13 .64 RPM |
SRP007412_cerebellum | 0 .00 RPM | 15 .46 RPM |
SRP007412_heart | 0 .00 RPM | 5 .45 RPM |
SRP007412_kidney | 0 .00 RPM | 10 .07 RPM |
SRP007412_liver | 0 .00 RPM | 17 .20 RPM |
SRP007412_testis | 0 .00 RPM | 9 .15 RPM |