RetrogeneDB ID: | retro_mmus_3358 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 9:78767109..78767480(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Myl6 | ||
Ensembl ID: | ENSMUSG00000090841 | ||
Aliases: | Myl6, ESMLC, LC17, LC17-GI, LC17-NM, LC17A, LC17B, MLC-3, MLC1SM, MLC3SM, MLC3nm, Myln | ||
Description: | myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318] |
Percent Identity: | 57.69 % |
Parental protein coverage: | 83.44 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | KILYSQC-GDVMRALGQNPTNAEVLKVLGNPKSDEMNVKVLDFEHFLPMLQTVAKNKDQGTYEDYVEGLR |
......C.....RALGQ...N..VLK.LGNPK.DEM..KVLDFEHFL.ML.T...NKDQG.YED.V.G.. | |
Retrocopy | QVMLKHCTANLVRALGQ---NTKVLKFLGNPKGDEMDMKVLDFEHFLSMLHTGTTNKDQGSYEDQVKGRH |
Parental | VFDKEGNGTVMGAEIRHVLVTLGEKMT-EEEVEMLVAGHEDSNGCINYEEL--VRMVLNG |
V.DK.GNGT.MG.EI.HV.V......T.E.E..M...GHED.NGCI.Y.EL..V.MVLNG | |
Retrocopy | VLDKDGNGTIMGGEICHVPVWMR*QRT<EVEMLM--TGHEDRNGCISYKELVCVWMVLNG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 86 .35 RPM |
SRP007412_cerebellum | 0 .00 RPM | 88 .75 RPM |
SRP007412_heart | 0 .00 RPM | 73 .25 RPM |
SRP007412_kidney | 0 .00 RPM | 113 .42 RPM |
SRP007412_liver | 0 .00 RPM | 60 .32 RPM |
SRP007412_testis | 0 .00 RPM | 23 .83 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Macropus eugenii | ENSMEUG00000001272 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000031838 | 6 retrocopies | |
Mus musculus | ENSMUSG00000061816 | 1 retrocopy | |
Mus musculus | ENSMUSG00000090841 | 7 retrocopies |
retro_mmus_1281, retro_mmus_1504, retro_mmus_2328, retro_mmus_3231, retro_mmus_3333, retro_mmus_3358 , retro_mmus_434,
|
Nomascus leucogenys | ENSNLEG00000000205 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000017371 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000034596 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000004647 | 3 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000004472 | 6 retrocopies | |
Sus scrofa | ENSSSCG00000025467 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000023318 | 1 retrocopy |