RetrogeneDB ID: | retro_mmus_342 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 1:86473658..86474003(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rpl30 | ||
Ensembl ID: | ENSMUSG00000058600 | ||
Aliases: | None | ||
Description: | ribosomal protein L30 [Source:MGI Symbol;Acc:MGI:98037] |
Percent Identity: | 84.35 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTG |
MVA.KK.K.SLESINSRLQ.VMKSGKY....KQTLKM.RQGKAKLVILA..CPA.RKSEIEYYAMLAKTG | |
Retrocopy | MVATKKMKESLESINSRLQFVMKSGKYLREFKQTLKMVRQGKAKLVILADSCPAWRKSEIEYYAMLAKTG |
Parental | VHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPEQTGEK |
VHHY.GNN..LGTACGKYYRVCTLA.IDP.DSDIIRSMPE.TGEK | |
Retrocopy | VHHYRGNNMKLGTACGKYYRVCTLASIDPSDSDIIRSMPEDTGEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 46 .73 RPM |
SRP007412_cerebellum | 0 .00 RPM | 28 .92 RPM |
SRP007412_heart | 0 .00 RPM | 78 .98 RPM |
SRP007412_kidney | 0 .00 RPM | 55 .54 RPM |
SRP007412_liver | 0 .00 RPM | 64 .39 RPM |
SRP007412_testis | 0 .05 RPM | 49 .99 RPM |
ENCODE library ID | Target | ChIP-Seq Peak coordinates |
---|---|---|
ENCFF001XVA | POLR2A | 1:86472184..86473003 |
ENCFF001YJZ | POLR2A | 1:86470627..86472950 |
ENCFF001YKA | POLR2A | 1:86470824..86472793 |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_77174 | 319 libraries | 489 libraries | 256 libraries | 8 libraries | 0 libraries |