Parental gene:

RPL30, ENSPPYG00000018774

Aliases:None
Description:ribosomal protein L30 [Source:HGNC Symbol;Acc:10333]
Organism:Orangutan (Pongo abelii)
Coordinates:8:104418099..104422008(-)


>ENSPPYG00000018774
ATGGTGGCCGCAAAGAAGACGAAAAAGTCGCTGGAGTCGATCAACTCTAGGCTTCAACTCGTTATGAAAAGTGGGAAGTA
CGTCCTGGGGTACAAGCAGACTCTGAAGATGATCAGACAAGGCAAAGCGAAATTGGTCATTCTCGCTAACAACTGCCCAG
CTTTGAGGAAATCTGAAATAGAGTACTATGCAATGTTGGCTAAAACTGGTGTCCATCACTACAGTGGCAATAATATTGAA
CTGGGCACAGCATGCGGAAAATACTACAGAGTGTGCACACTGGCTATCATTGATCCAGGTGACTCTGACATCATCAGAAG
CATGCCAGAACAGACTGGTGAAAAGTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 96 .59 RPM
SRP007412_cerebellum 155 .04 RPM
SRP007412_heart 151 .51 RPM
SRP007412_kidney 198 .52 RPM
SRP007412_liver 190 .83 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000016047 ortholog_many2many 2 retrogenes
retro_acar_170, retro_acar_47,
Ailuropoda melanoleuca ENSAMEG00000000605 possible_ortholog 18 retrogenes
retro_amel_1007, retro_amel_1148, retro_amel_1205, retro_amel_1456, retro_amel_1490, retro_amel_1596, retro_amel_1709, retro_amel_1738, retro_amel_26, retro_amel_384, retro_amel_40, retro_amel_456, retro_amel_50, retro_amel_534, retro_amel_551, retro_amel_642, retro_amel_745, retro_amel_806,
Bos taurus ENSBTAG00000016278 possible_ortholog 2 retrogenes
retro_btau_34, retro_btau_992,
Callithrix jacchus ENSCJAG00000015549 possible_ortholog 4 retrogenes
retro_cjac_14, retro_cjac_253, retro_cjac_320, retro_cjac_351,
Felis catus ENSFCAG00000002165 possible_ortholog 9 retrogenes
retro_fcat_1261, retro_fcat_1391, retro_fcat_1473, retro_fcat_1689, retro_fcat_1872, retro_fcat_323, retro_fcat_45, retro_fcat_49, retro_fcat_754,
Gorilla gorilla ENSGGOG00000005502 ortholog_one2one 9 retrogenes
retro_ggor_1416, retro_ggor_1663, retro_ggor_178, retro_ggor_1925, retro_ggor_2661, retro_ggor_2886, retro_ggor_3073, retro_ggor_46, retro_ggor_866,
Loxodonta africana ENSLAFG00000002077 ortholog_one2one 2 retrogenes
retro_lafr_122, retro_lafr_882,
Microcebus murinus ENSMICG00000004620 possible_ortholog 3 retrogenes
retro_mmur_258, retro_mmur_644, retro_mmur_693,
Macaca mulatta ENSMMUG00000020073 possible_ortholog 12 retrogenes
retro_mmul_1353, retro_mmul_2275, retro_mmul_2291, retro_mmul_2309, retro_mmul_2322, retro_mmul_2473, retro_mmul_29, retro_mmul_319, retro_mmul_416, retro_mmul_576, retro_mmul_663, retro_mmul_857,
Monodelphis domestica ENSMODG00000006804 possible_ortholog 1 retrogene
retro_mdom_664,
Mus musculus ENSMUSG00000058600 ortholog_one2one 21 retrogenes
retro_mmus_1048, retro_mmus_1102, retro_mmus_1276, retro_mmus_1434, retro_mmus_1439, retro_mmus_1586, retro_mmus_2059, retro_mmus_2273, retro_mmus_2728, retro_mmus_2828, retro_mmus_3179, retro_mmus_3286, retro_mmus_342, retro_mmus_3465, retro_mmus_3573, retro_mmus_3583, retro_mmus_3681, retro_mmus_3691, retro_mmus_569, retro_mmus_789, retro_mmus_892,
Oryctolagus cuniculus ENSOCUG00000017386 ortholog_one2many 4 retrogenes
retro_ocun_1447, retro_ocun_1580, retro_ocun_178, retro_ocun_279,
Ochotona princeps ENSOPRG00000007644 possible_ortholog 3 retrogenes
retro_opri_1087, retro_opri_662, retro_opri_954,
Sus scrofa ENSSSCG00000006081 ortholog_one2one 6 retrogenes
retro_sscr_100, retro_sscr_1211, retro_sscr_778, retro_sscr_782, retro_sscr_876, retro_sscr_963,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_8 77.27 95.65
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2. retro_pabe_178 97.37 99.13
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3. retro_pabe_1605 82.76 100.00
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4. retro_pabe_2846 85.22 100.00
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Download FASTA sequences of all ENSPPYG00000018774 retrocopies