Parental gene:

RPL30, ENSGGOG00000005502

Aliases:None
Description:None
Organism:Gorilla (Gorilla gorilla)
Coordinates:8:97107578..97111397(-)


>ENSGGOG00000005502
ATGGTGGCCGCAAAGAAGACGAAAAAGTCGCTGGAGTCGATCAACTCTAGGCTCCAACTCGTTATGAAAAGTGGGAAGTA
CGTCCTGGGGTACAAGCAGACTCTGAAGATGATCAGACAAGGCAAAGCGAAATTGGTCATTCTTGCTAACAACTGCCCAG
CTTTGAGGAAATCTGAAATAGAGTACTATGCTATGTTGGCTAAAACTGGTGTCCATCACTACAGTGGCAATAATATTGAA
CTGGGCACAGCATGCGGAAAATACTACAGAGTGTGCACACTGGCTATCATTGATCCAGGTGACTCTGACATCATTAGAAG
CATGCCAGAACAGACTGGTGAAAAGTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 95 .19 RPM
SRP007412_cerebellum 126 .86 RPM
SRP007412_heart 89 .56 RPM
SRP007412_kidney 304 .99 RPM
SRP007412_liver 389 .34 RPM
SRP007412_testis 293 .60 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000016047 ortholog_many2many 2 retrogenes
retro_acar_170, retro_acar_47,
Ailuropoda melanoleuca ENSAMEG00000000605 possible_ortholog 18 retrogenes
retro_amel_1007, retro_amel_1148, retro_amel_1205, retro_amel_1456, retro_amel_1490, retro_amel_1596, retro_amel_1709, retro_amel_1738, retro_amel_26, retro_amel_384, retro_amel_40, retro_amel_456, retro_amel_50, retro_amel_534, retro_amel_551, retro_amel_642, retro_amel_745, retro_amel_806,
Bos taurus ENSBTAG00000016278 possible_ortholog 2 retrogenes
retro_btau_34, retro_btau_992,
Callithrix jacchus ENSCJAG00000015549 possible_ortholog 4 retrogenes
retro_cjac_14, retro_cjac_253, retro_cjac_320, retro_cjac_351,
Felis catus ENSFCAG00000002165 possible_ortholog 9 retrogenes
retro_fcat_1261, retro_fcat_1391, retro_fcat_1473, retro_fcat_1689, retro_fcat_1872, retro_fcat_323, retro_fcat_45, retro_fcat_49, retro_fcat_754,
Loxodonta africana ENSLAFG00000002077 ortholog_one2one 2 retrogenes
retro_lafr_122, retro_lafr_882,
Microcebus murinus ENSMICG00000004620 possible_ortholog 3 retrogenes
retro_mmur_258, retro_mmur_644, retro_mmur_693,
Macaca mulatta ENSMMUG00000020073 possible_ortholog 12 retrogenes
retro_mmul_1353, retro_mmul_2275, retro_mmul_2291, retro_mmul_2309, retro_mmul_2322, retro_mmul_2473, retro_mmul_29, retro_mmul_319, retro_mmul_416, retro_mmul_576, retro_mmul_663, retro_mmul_857,
Monodelphis domestica ENSMODG00000006804 possible_ortholog 1 retrogene
retro_mdom_664,
Mus musculus ENSMUSG00000058600 ortholog_one2one 21 retrogenes
retro_mmus_1048, retro_mmus_1102, retro_mmus_1276, retro_mmus_1434, retro_mmus_1439, retro_mmus_1586, retro_mmus_2059, retro_mmus_2273, retro_mmus_2728, retro_mmus_2828, retro_mmus_3179, retro_mmus_3286, retro_mmus_342, retro_mmus_3465, retro_mmus_3573, retro_mmus_3583, retro_mmus_3681, retro_mmus_3691, retro_mmus_569, retro_mmus_789, retro_mmus_892,
Oryctolagus cuniculus ENSOCUG00000017386 ortholog_one2many 4 retrogenes
retro_ocun_1447, retro_ocun_1580, retro_ocun_178, retro_ocun_279,
Ochotona princeps ENSOPRG00000007644 possible_ortholog 3 retrogenes
retro_opri_1087, retro_opri_662, retro_opri_954,
Pongo abelii ENSPPYG00000018774 ortholog_one2one 4 retrogenes
retro_pabe_1605, retro_pabe_178, retro_pabe_2846, retro_pabe_8,
Sus scrofa ENSSSCG00000006081 ortholog_one2one 6 retrogenes
retro_sscr_100, retro_sscr_1211, retro_sscr_778, retro_sscr_782, retro_sscr_876, retro_sscr_963,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ggor_46 85.09 99.13
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2. retro_ggor_178 80.00 95.65
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3. retro_ggor_866 79.13 100.00
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4. retro_ggor_1416 89.47 99.13
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5. retro_ggor_1663 82.47 83.48
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6. retro_ggor_1925 92.68 71.30
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7. retro_ggor_2661 73.08 90.43
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8. retro_ggor_2886 75.93 92.17
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9. retro_ggor_3073 79.35 79.13
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Download FASTA sequences of all ENSGGOG00000005502 retrocopies