RetrogeneDB ID: retro_mputfur_1250

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897054.1:3243420..3243739(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: TMEM138
• Ensembl ID: ENSMPUG00000014175
• Aliases: None
• Description: transmembrane protein 138 [Source:HGNC Symbol;Acc:26944]

Sequence

>retro_mputfur_1250
GTTAATTCCTTCCTAGAACTACTCTGAATGGCTCTTGTCATCCTGGTGATTGCTGTTATCCGGGATACCGTGATTCTCTG
CAACATCAGCACCATTTTCCTCCTGTTCTTCAACATCTTCCTCTTCCAGGCTGGCCTGGGCAACTCTGTATTCCAGAAGT
TCAAAGGGATCGCCCTCCTCACAGTTGTGTTATTTGCCCCCAGCATCTTCCTTCATGCCTGGGTCATGACTTAACACTGG
AAAAACTCCCAATTGCTTTGTCAGGAGAGAGGGACTTCAAACTCCGTTTGTATTCCGGAGACTAGCACAGCGGTGTTAT

Alignment

ORF - retro_mputfur_1250 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 61.11 %
• Parental protein coverage: 66.46 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  VNSFSELLRTAPVIQLVLFIIQDIAILFNIIIIFLMFFNTFVFQAGLVNLLFHKFKGTIILTAVYFALSI
          VNSF.ELL..A.VI.LV...I.D..IL.NI..IFL.FFN.F.FQAGL.N..F.KFKG...LT.V.FA.SI
Retrocopy VNSFLELL*MALVI-LVIAVIRDTVILCNISTIFLLFFNIFLFQAGLGNSVFQKFKGIALLTVVLFAPSI

Parental  SLHVWVMNLRWKNS-NRFVWTDGLQTLFVFQRLAAVLY
          .LH.WVM...WKNS.N.FV...GLQT.FVF.RLA...Y
Retrocopy FLHAWVMT*HWKNS>NCFVRREGLQTPFVFRRLAQRCY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1250 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1250 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 2 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000016585	1 retrocopy	retro_amel_279,
Mustela putorius furo	ENSMPUG00000014175	4 retrocopies	retro_mputfur_1250 , retro_mputfur_291, retro_mputfur_883, retro_mputfur_959,