RetrogeneDB ID: | retro_mputfur_959 | ||
Retrocopylocation | Organism: | Ferret (Mustela putorius furo) | |
| Coordinates: | GL896981.1:4484713..4484979(-) | ||
| Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
| Parental gene symbol: | TMEM138 | ||
| Ensembl ID: | ENSMPUG00000014175 | ||
| Aliases: | None | ||
| Description: | transmembrane protein 138 [Source:HGNC Symbol;Acc:26944] |
Retrocopy-Parental alignment summary:
>retro_mputfur_959
GAGGCGGCACTGGGCAACTCTGTATTCCATAAGTTCAAAGGGACCGCCCTCCTCACAGCTAAGTTCTTCGCCCCCAGCAT
CTTCCTTCAGGTCTGGGTCATGACTTTACACTGGAAAAATTCCCAACTGCTTTGTCAGGACAAAGGGACTTCAAACTCTA
TATTCTGGAGACTAGCATGGCAGTGTTATATGGTTACTTCTGTAAATGGACAGCTGTGAGACTGGGTGATCCTCACTCCT
ACCAGGACTCTTTATGCCTGCACAAG
GAGGCGGCACTGGGCAACTCTGTATTCCATAAGTTCAAAGGGACCGCCCTCCTCACAGCTAAGTTCTTCGCCCCCAGCAT
CTTCCTTCAGGTCTGGGTCATGACTTTACACTGGAAAAATTCCCAACTGCTTTGTCAGGACAAAGGGACTTCAAACTCTA
TATTCTGGAGACTAGCATGGCAGTGTTATATGGTTACTTCTGTAAATGGACAGCTGTGAGACTGGGTGATCCTCACTCCT
ACCAGGACTCTTTATGCCTGCACAAG
ORF - retro_mputfur_959 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 56.67 % |
| Parental protein coverage: | 55.28 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | QAGLVNLLFHKFKGTIILTAVYFALSISLHVWVMNLRWKNSNRFVWTDGLQT-LFVFQRLAAVLYCYFYK |
| .A.L.N..FHKFKGT..LTA..FA.SI.L.VWVM.L.WKNS.......G....L.......AVLY.YF.K | |
| Retrocopy | EAALGNSVFHKFKGTALLTAKFFAPSIFLQVWVMTLHWKNSQLLCQDKGTSN<LYILETSMAVLYGYFCK |
| Parental | RTAVRLGDPRFYQDSLWLRK |
| .TAVRLGDP..YQDSL.L.K | |
| Retrocopy | WTAVRLGDPHSYQDSLCLHK |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Mustela putorius furo was not studied using RNA-Seq expression data.
Mustela putorius furo was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mputfur_959 retrocopy.
Mustela putorius furo was not studied using FANTOM5 data.
retro_mputfur_959 was not experimentally validated.
Retrocopy orthology:
Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 5 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000016585 | 1 retrocopy | |
| Mustela putorius furo | ENSMPUG00000014175 | 4 retrocopies |