RetrogeneDB ID: retro_mputfur_291

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896901.1:29873388..29873778(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: TMEM138
• Ensembl ID: ENSMPUG00000014175
• Aliases: None
• Description: transmembrane protein 138 [Source:HGNC Symbol;Acc:26944]

Sequence

>retro_mputfur_291
GTTAATTCCTTCGCAGAACTACTCTGAATGGTTCCCCTCATAGTGGTGCTTTTCGTTATCCAGGATACTGCCATTCTCTT
CAACATCAGCATGCTTTTCCTCCTGTTTTCCAACACCTTCGTCTTCCAAGCTGGCCTGGGCAACCCTGTATTCTTGAAGT
TCAAAGGGACCGTCTTCCTCATGGCTGTGTTCTTCGTCCCCAGCATCTTCCTTCATGTCTGGGTCATGACTTAACACTGG
AAAAACTCCCAGCTTCTTTGTCAGGAGAGAGGGACTTCAAACTCTGTATTCTGGAGACTAGCAAGGCAGTTATACTGTTA
CTTCAACAAATGGACAGCTGTGAGACTGGGTGATCCTCGCTTCTACCAGGACTCTTTATGCCTGTACAAG

Alignment

ORF - retro_mputfur_291 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 64.39 %
• Parental protein coverage: 81.99 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  VNSFSELLRTAPVIQLVLFIIQDIAILFNIIIIFLMFFNTFVFQAGLVNLLFHKFKGTIILTAVYFALSI
          VNSF.ELL...P.I..VLF.IQD.AILFNI...FL.F.NTFVFQAGL.N..F.KFKGT..L.AV.F..SI
Retrocopy VNSFAELL*MVPLI-VVLFVIQDTAILFNISMLFLLFSNTFVFQAGLGNPVFLKFKGTVFLMAVFFVPSI

Parental  SLHVWVMNLRWKNSNRFVWTDGLQTLFVFQRLAAVLYCYFYKRTAVRLGDPRFYQDSLWLRK
          .LHVWVM...WKNS.......G.....VF.RLA..LYCYF.K.TAVRLGDPRFYQDSL.L.K
Retrocopy FLHVWVMT*HWKNSQLLCQERGTSNS-VFWRLARQLYCYFNKWTAVRLGDPRFYQDSLCLYK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_291 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_291 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000016585	1 retrocopy	retro_amel_279,
Mustela putorius furo	ENSMPUG00000014175	4 retrocopies	retro_mputfur_1250, retro_mputfur_291 , retro_mputfur_883, retro_mputfur_959,