RetrogeneDB ID: retro_mputfur_807

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896950.1:8778552..8779291(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: TUBB
• Ensembl ID: ENSMPUG00000011690
• Aliases: None
• Description: tubulin, beta class I [Source:HGNC Symbol;Acc:20778]

Sequence

>retro_mputfur_807
ACATTTCATCCAGATGGCCCACAGGCACATGACCACATCTCCTTGTACTACAATGAAGCTACAGGTGGCAAATATGTTCC
TTGTGCTATATTGGTGGATCTAGAACCCAGGACCATGGACTCTGTTCCCTCAGGGCCTCTTGGGCAGATATTCAGACCAG
ACAGCTTTGTTTTTGATCAGTCAAAGAAGGTAACAACTGAGCCAAGGGCCATTGTACAGAGAGGGCTGAGCTGGTTGACT
CAGTCCTGGATATGGTGAGGAAGGGGGCCAAGAGCTGTGACTGCCTGAAGGCCTTCCAGCTGACCCACTCCCTGGGTGGG
GGCACAGGCTCTGGAACGGTCACCTTGCTCATCAGCAAGATCCAAAAAGAGTATCCCAACTGTATCATGAACACCTTCAG
TGTGGTACTCTCACCCAAAGCATCTGACACAGTGGTCACACCCTACAATGTCATCTTTTCCATCCATCAGTTGCTAGAGA
ACACAGATGAGACCTACTGCTTTGACAATGAGGCCCTTTATGACATCTGCTTCTGTACTCTCAAGCTGACCATGCCAACC
TACAGGGACCTGAACCACCTTGTCTCAGCCACCATGAGCGATCTCAACACGTGCCTCTGCTTCCCTGATCAGCTCAGTGC
TGACCTCCACAAGCTAGCCAACAGCATGTTGCCCTTTACATCTCTTCACTTCTTCATGCCTGGCTTTGCACTCTGACCAG
CCATGGAAGCCAGCAATAT

Alignment

ORF - retro_mputfur_807 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 75.5 %
• Parental protein coverage: 55.63 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  TYHGDSDLQLDRISVYYNEATGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGA-GNNWAK
          T.H.D.....D.IS.YYNEATGGKYVP.AILVDLEP.TMDSV.SGP.GQIFRPD.FVF.QS...GNN.AK
Retrocopy TFHPDGPQAHDHISLYYNEATGGKYVPCAILVDLEPRTMDSVPSGPLGQIFRPDSFVFDQSKK<GNN*AK

Parental  GHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNIFSVVPSP
          GH.TE.AELVDSVLD.VRK.A.SCDCL..FQLTHSLGGGTGSG..TLLISKI..EYP..IMN.FSVV.SP
Retrocopy GHCTERAELVDSVLDMVRKGAKSCDCLKAFQLTHSLGGGTGSGTVTLLISKIQKEYPNCIMNTFSVVLSP

Parental  RVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFP
          ..SDTVV.PYN...S.HQL.ENTDETYC.DNEALYDICF.TLKLT.PTY.DLNHLVSATMS...TCL.FP
Retrocopy KASDTVVTPYNVIFSIHQLLENTDETYCFDNEALYDICFCTLKLTMPTYRDLNHLVSATMSDLNTCLCFP

Parental  GQLNADLRKLAVNMVPFPRLHFFMPGFA-PLTSRGSQQY
          .QL.ADL.KLA..M.PF..LHFFMPGFA..LTS.GSQQY
Retrocopy DQLSADLHKLANSMLPFTSLHFFMPGFA<TLTSHGSQQY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_807 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_807 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000006969	2 retrocopies	retro_btau_471, retro_btau_55,
Canis familiaris	ENSCAFG00000000443	1 retrocopy	retro_cfam_1860,
Macaca mulatta	ENSMMUG00000023684	2 retrocopies	retro_mmul_2501, retro_mmul_375,
Mustela putorius furo	ENSMPUG00000006958	1 retrocopy	retro_mputfur_1255,
Mustela putorius furo	ENSMPUG00000011690	3 retrocopies	retro_mputfur_1123, retro_mputfur_607, retro_mputfur_807 ,
Nomascus leucogenys	ENSNLEG00000005348	1 retrocopy	retro_nleu_498,
Otolemur garnettii	ENSOGAG00000032213	1 retrocopy	retro_ogar_2391,