RetrogeneDB ID: retro_mputfur_130

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897089.1:480195..481551(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000019643
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000003660
• Aliases: None
• Description: None

Sequence

>retro_mputfur_130
ATGCGTGAGTGTATCTCCATCCACGTTGGCCAGGCTGGTGTCCAGATTGGCAATGCCTGCTGGGAGCTCTATTGCCTGGA
GCATGGCATTCAGCCCGATGGCCAGATGCCAAGTGACAAGACCATCGGGGGAGGAGACGACTCCTTCAACACCTTCTTCA
GTGAGACTGGTGCTGGCAAGCATGTGCCCCGGGCCATGTTTGTAGACCTGGGACCCACAGTCATTGATGAAGTTTGCACT
GGCACCTACCGCCAGCTCTTCCACCCTGAGCAGCTCATCACAGGCAAGGAAGATGCTGCCAACAACTACGTCCAAGGGCA
CTACACCATTGGCAAAGAGATCATTGACCTTGTCTTGGACCGAATTCGGAAGCTGGCTGACCAGTGCACAGGTCTTCAGG
GCTTCTTGGTTTTCCACAGCTTTGGAGGGGGAACTGGTTCCGGGTTCACCTCCCTGCTGATGGAACGTCTCTCTGTCGAT
TATGGCAAGAAGTCCAAGCTGGAGTTCTCCATCTACCCAGCCCCTCAGGTTTCCACAGCTGTAGTTGAGCCCTACAACTC
CATCCTCACTACCCACACCACCCTGGAGCACTCTGATTGTGCCTTCATGGTAGACAATGAGGCCATCTATGACATCTGTT
GTAGAAACCTTGATATTGAACGCCCAACCTACACTAATCTAAATAGGTTGATAGGCCAGATTGTGTCCTCCATCACCGCT
TCCCTCAGATTTGATGGAGCCCTGAACGTTGATCTGACAGAATTCCAGACCAACCTGGTGCCCTATCCCCGTATCCACTT
CCCTCTGGCCACCTATGCCCCTGTCATCTCTGCTGAGAAAGCCTACCATGAACAGCTTTCTGTAGCAGAGATCACCAACG
CGTGCTTTGAGCCAGCCAACCAGATGGTGAAATGTGACCCTCGCCATGGTAAATACATGGCTTGCTGCCTGTTGTACCGT
GGCGATGTGGTTCCCAAAGATGTCAATGCTGCCATTGCCACCATCAAGACCAAGCGTACCATCCAGTTTGTGGACTGGTG
CCCCACTGGCTTCAAAGTGGGCATTAATTACCAGCCTCCCACTGTGGTGCCCGGTGGAGACCTGGCCAAAGTCCAGCGAG
CTGTGTGCATGCTGAGCAACACCACAGCCATCGCTGAGGCCTGGGCTCGCCTGGACCACAAGTTTGACCTGATGTATGCC
AAGCGTGCCTTTGTTCACTGGTATGTGGGGGAAGACATGGAGGAAGGAGAGTTTTCTGAGGCCCGTGAGGACATGGCTGC
CCTTGAGAAGGATTATGAGGAGGTTGGTGTGGATTCTGTTGAAGGAGAGGGTGAAGAAGAAGGAGAGGAATACTAA

Alignment

ORF - retro_mputfur_130 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 96.01 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDL
          MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRA.FVDL
Retrocopy MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAMFVDL

Parental  EPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADLCTGLQGFLIFHS
          .PTV.DEV.TGTYRQLFHPEQLITGKEDAANNY..GHYTIGKEI.DLVLDRIRKLAD.CTGLQGFL.FHS
Retrocopy GPTVIDEVCTGTYRQLFHPEQLITGKEDAANNYVQGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHS

Parental  FGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIY
          FGGGTGSGF.SLLMERLSVDYGKKSKLEF.IYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIY
Retrocopy FGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIY

Parental  DICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEK
          DIC.RNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEK
Retrocopy DICCRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEK

Parental  AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTG
          AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC.LYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTG
Retrocopy AYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTG

Parental  FKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
          FKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGE.MEEGEFSE
Retrocopy FKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEDMEEGEFSE

Parental  AREDLAALEKDYEEVGVDSVEAEA-EEGEEY
          ARED.AALEKDYEEVGVDSVE.E..EEGEEY
Retrocopy AREDMAALEKDYEEVGVDSVEGEGEEEGEEY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_130 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_130 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Equus caballus	ENSECAG00000014403	1 retrocopy	retro_ecab_318,
Monodelphis domestica	ENSMODG00000023336	1 retrocopy	retro_mdom_973,
Mustela putorius furo	ENSMPUG00000003660	1 retrocopy	retro_mputfur_130 ,
Mus musculus	ENSMUSG00000067338	1 retrocopy	retro_mmus_3356,