RetrogeneDB ID: retro_mputfur_1571

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897263.1:506219..507328(-)
• Located in intron of: ENSMPUG00000017584

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: PRKRIR
• Ensembl ID: ENSMPUG00000008784
• Aliases: None
• Description: protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) [Source:HGNC Symbol;Acc:9440]

Sequence

>retro_mputfur_1571
AGTCCTTATAGGACAGTTCTTCGAGATAATGCAATACCAACAATATTTGATCTTACCAGTCATTTGAACTATCCACATAG
TAGACACAGAAAACGAATAAAAGAATTGAGTGAAGATGAAACCAGGACACTGAAACAGAAAAAAAATTGATGAAACTTCT
TAACAGGAACCAAAACATAAAGAGATAAACAGCAACGCTCAGAATCCTAGTGCAGAAGAAGGGGGTGAGGAACAGGATGA
AGATATTTTACCTTTAACCCTTGAAGAGAAAGAAAACAAAGAATACTTAAAATCTCTATTTGAAATTTTGATTCTTATGG
GAAAACAAAACATACCTCTGGATGGGCATGAAACTGATGAAATCCCAGAGGGTCTCTTTACTCCTGATAACTTTGAAGCG
CTGCTGAAGTGCCGGATAAATTCTGGTGAAGAGGTTCTGACAAAGCGCTTTGAGACAACAGCAGTTAACACATTGTTCTG
CTGGAAAACACAGCAGAAACAGATGATAGAGATCTGTGAGAGCTGCATTTGGGAAGAAACTCTCAGGGAAGTGAGAGACG
CGCACTTCTTTTCCATCATCACTGATGACGTAGTGGACATAGCAGGAGAAGAACACTTGCCTGTGTTGGTGAGGTTTGTT
GATGAATCTCATAACCTGAGAGAGGAATTTGTGGGCTTCTTGCCTTGTGAAGCTGATGCAGAAATTTTGGCTGTGAAATT
TCACACTACCATAACTGAGAAGTGGGGGGTTAAACATGGAGTATTGTCGTGGCCAGGCTTACATTGTGTCCAGTGGATTT
TCTTCCAAAATGAAAGTTGTTGCTTCTAGACTTTCAGAGAAATATCCCCAAGCTGTCTACACACTTTGCTCATCTTGTGC
CTTAAATATGTGGCTGGCAAAATCAGTGCCTGTTGTGGGAGTGTCTGTTGCGTTAGGAACAATTGAGGAAGTTTGTTCTT
TGTTCCATCGATCCTCACAACTGCTTTTGGAGCTTGACAATGTAATTTCTGTCCTCTTTCAGAACAATGAGGAAAAGGGT
AAAGAACTGAAGGAGATCTGCCATTCTCAGTGGACAGGTAGGCATGATGCACTTGTTTTATGTTTAGAT

Alignment

ORF - retro_mputfur_1571 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.01 %
• Parental protein coverage: 53.08 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  SPYRTVLRDNAIPTIFDLTSHLNNPHSRHRKRIKELSEDEIRTLKQKKI-DETSEQVPKHKEINNSNAQN
          SPYRTVLRDNAIPTIFDLTSHLN.PHSRHRKRIKELSEDE.RTLKQ....DETS.Q.PKHKEI.NSNAQN
Retrocopy SPYRTVLRDNAIPTIFDLTSHLNYPHSRHRKRIKELSEDETRTLKQXXX>DETS*QEPKHKEI-NSNAQN

Parental  PSAEEGGEEQDEDILPLTLEEKENKEYLKSLFEILILMGKQNIPLDGHETDEIPEGLFTPDNFQALLECR
          PSAEEGGEEQDEDILPLTLEEKENKEYLKSLFEILILMGKQNIPLDGHETDEIPEGLFTPDNF.ALL.CR
Retrocopy PSAEEGGEEQDEDILPLTLEEKENKEYLKSLFEILILMGKQNIPLDGHETDEIPEGLFTPDNFEALLKCR

Parental  INSGEEVLRKRFETTAVNTLFCSKTQQKQMLEICESCIREETLREVRDSHFFSIITDDVVDIAGEEHLPV
          INSGEEVL.KRFETTAVNTLFC.KTQQKQM.EICESCI.EETLREVRD.HFFSIITDDVVDIAGEEHLPV
Retrocopy INSGEEVLTKRFETTAVNTLFCWKTQQKQMIEICESCIWEETLREVRDAHFFSIITDDVVDIAGEEHLPV

Parental  LVRFVDESHNLREEFVGFLPYEADAEILAVKFHTTITEKW-GLNMEYCRGQAYIVSSGFSSKMKVVASRL
          LVRFVDESHNLREEFVGFLP.EADAEILAVKFHTTITEKW.GLNMEYCRGQAYIVSSGFSSKMKVVASRL
Retrocopy LVRFVDESHNLREEFVGFLPCEADAEILAVKFHTTITEKW>GLNMEYCRGQAYIVSSGFSSKMKVVASRL

Parental  LEKYPQAVYTLCSSCALNMWLAKSVPVVGVSVALGTIEEVCSFFHRSPQLLLELDNVISVLFQNNEEKGK
          .EKYPQAVYTLCSSCALNMWLAKSVPVVGVSVALGTIEEVCS.FHRS.QLLLELDNVISVLFQNNEEKGK
Retrocopy SEKYPQAVYTLCSSCALNMWLAKSVPVVGVSVALGTIEEVCSLFHRSSQLLLELDNVISVLFQNNEEKGK

Parental  ELKEICHSQWTGRHDAFEILVD
          ELKEICHSQWTGRHDA.....D
Retrocopy ELKEICHSQWTGRHDALVLCLD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1571 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1571 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 8 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Anolis carolinensis	ENSACAG00000024488	1 retrocopy	retro_acar_167,
Bos taurus	ENSBTAG00000031609	2 retrocopies	retro_btau_1797, retro_btau_780,
Canis familiaris	ENSCAFG00000005274	1 retrocopy	retro_cfam_663,
Equus caballus	ENSECAG00000021982	1 retrocopy	retro_ecab_150,
Homo sapiens	ENSG00000137492	1 retrocopy	retro_hsap_4080,
Mustela putorius furo	ENSMPUG00000008784	1 retrocopy	retro_mputfur_1571 ,
Pan troglodytes	ENSPTRG00000004091	1 retrocopy	retro_ptro_2766,
Tursiops truncatus	ENSTTRG00000013287	1 retrocopy	retro_ttru_126,